PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676720782
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family FAR1
Protein Properties Length: 460aa    MW: 52721 Da    PI: 6.9462
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676720782genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1896.6e-28289377291
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 Y++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+++ ++ +++r++ra tr gCka ++vkkek+gkw vtk+ +eHnH+l p
  676720782 289 VYDSYATSTGFVMRVDAFRRSMRDGTVVWRRLVCNKEGFRRSRPRR-SESRKPRAITREGCKALIVVKKEKSGKWLVTKFIKEHNHPLLP 377
                69******************************************99.9***************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5022214.458136IPR002048EF-hand domain
SuperFamilySSF474736.5E-413142IPR011992EF-hand domain pair
Gene3DG3DSA:1.10.238.104.8E-27488IPR011992EF-hand domain pair
CDDcd000512.48E-15562No hitNo description
SMARTSM000540.0018533IPR002048EF-hand domain
PfamPF134991.6E-11566IPR002048EF-hand domain
PROSITE patternPS0001801426IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS5022212.843772IPR002048EF-hand domain
SMARTSM000548.2E-44169IPR002048EF-hand domain
PROSITE patternPS0001805062IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS5022216.85774109IPR002048EF-hand domain
PfamPF134993.0E-1276142IPR002048EF-hand domain
SMARTSM000541.4E-678106IPR002048EF-hand domain
CDDcd000519.62E-1882142No hitNo description
PROSITE patternPS0001808799IPR018247EF-Hand 1, calcium-binding site
Gene3DG3DSA:1.10.238.103.9E-2289142IPR011992EF-hand domain pair
PROSITE profilePS5022215.071112147IPR002048EF-hand domain
SMARTSM000541.3E-5116144IPR002048EF-hand domain
PROSITE patternPS000180125137IPR018247EF-Hand 1, calcium-binding site
PfamPF031012.7E-26289377IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDQAELCRIF QMFDRNGDGK ITKQELNDSL ENLGIYIPDK DLVQMIEKID LNGDGYVDIE  60
EFGGLYQTIM EERDEEEDMR EAFNVFDQNR DGFITVEELR SVLASLGLKQ GRTLEDCKRM  120
ISKVDVDGDG MVNFKEFKQM MKGGGFAALG SNLKSNSVWY EHGGKIQRMK FTCLHPKASQ  180
SSSTVQEHNE ERSSTWFLLS SSSPLPFLCH SLSSVSEIIH HHCLSRSLPI WSFLIFHRME  240
ALEGNPLRGE GVEIMENSNG KYTVTDEASS MVEPFIGMEF DSEEAAKSVY DSYATSTGFV  300
MRVDAFRRSM RDGTVVWRRL VCNKEGFRRS RPRRSESRKP RAITREGCKA LIVVKKEKSG  360
KWLVTKFIKE HNHPLLPRLL LPNARRSSQL SQTPDEKDAK IKELNTELSR ERRRCAVLQQ  420
QLDMALKLME EHSNHLSIKI SNVIQNVREI ESNTFTKPLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2n6a_A4e-30414812154human calmodulin/connexin-36 peptide hybrid
Cis-element ? help Back to Top
SourceLink
PlantRegMap676720782
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0098530.0AC009853.4 Arabidopsis thaliana chromosome III BAC F21O3 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.11e-106FAR1 family protein