PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676720656

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 409aa MW: 45766 Da PI: 7.8679

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676720656	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.4e-09	187	234	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq 676720656 187 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 234 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.58E-17	181	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.46E-9	181	238	No hit	No description
PROSITE profile	PS50888	15.663	183	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-17	183	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-6	187	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	189	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MDNELFMNAG VLHASQMTSL SSSSSAMLNW ASMEGTQPME QSLIRNLPWE KSTEQSIFDS 60 ALSSLVSSPT PSNSNFSGCG GGVGGENFVI RELIGSSTNG KLTRVSSTPS LKPLASQEDP 120 AAESSRKRKT KAKDNSPSVA SKEVEDKEDS DSKRSRKSEG SGEEAKSLDP YKDYIHVRAR 180 RGQATDSHSL AERVRREKIS ERMKLLQDLV PGCNKVTGKA LMLDEIINYV QSLQRQVEFL 240 SMKLSSVNTR LDFNMDALMS KDIFPSSNNL IHHHQQVLQL ESSSETLLAE HHNNHTLQLN 300 PNSSSNNILD PMETSEARSF NSQLPTHTHF TDSISQFSTF SEDDLHSIIH MGFAQNHIRK 360 SNQVQVQSHN FQGWKANKYI LSALFNMKGY NLRRHICTTQ VHRTKYHHT

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MDNELFMNAG VLHASQMTSL SSSSSAMLNW ASMEGTQPME QSLIRNLPWE KSTEQSIFDS  60
ALSSLVSSPT PSNSNFSGCG GGVGGENFVI RELIGSSTNG KLTRVSSTPS LKPLASQEDP  120
AAESSRKRKT KAKDNSPSVA SKEVEDKEDS DSKRSRKSEG SGEEAKSLDP YKDYIHVRAR  180
RGQATDSHSL AERVRREKIS ERMKLLQDLV PGCNKVTGKA LMLDEIINYV QSLQRQVEFL  240
SMKLSSVNTR LDFNMDALMS KDIFPSSNNL IHHHQQVLQL ESSSETLLAE HHNNHTLQLN  300
PNSSSNNILD PMETSEARSF NSQLPTHTHF TDSISQFSTF SEDDLHSIIH MGFAQNHIRK  360
SNQVQVQSHN FQGWKANKYI LSALFNMKGY NLRRHICTTQ VHRTKYHHT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	129	SRKRKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676720656

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013638496.1	1e-162	PREDICTED: transcription factor bHLH62
Swissprot	Q9SRT2	1e-145	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A0D3CM28	1e-160	A0A0D3CM28_BRAOL; Uncharacterized protein
STRING	Bo5g141620.1	1e-161	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-129	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]