PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676720558
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 929aa    MW: 101770 Da    PI: 6.5183
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676720558genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.6e-135816541897
                --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 pkkf++ h+ k  e+k  ++  e  +sWev +    ++ +  +++GW++ +++ gL +gD+++Fkl++   +e ++kv 
  676720558 581 TPKKFVDMHMPK--ETKLFKILAEGKKSWEVLY--LATDTKSRFSAGWSRLARELGLVVGDVCTFKLIK--PTEILLKVS 654
                59****999855..55689999999********..5555555599*********************987..444566655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF128191.3E-3830207IPR024788Malectin-like carbohydrate-binding domain
PfamPF128192.0E-10276371IPR024788Malectin-like carbohydrate-binding domain
PfamPF082632.4E-5410444IPR013210Leucine-rich repeat-containing N-terminal, plant-type
SuperFamilySSF520582.72E-8430500IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.9E-9433499IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5086311.307564657IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-16564655IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-15564655IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-13565647No hitNo description
SMARTSM010191.7E-13567657IPR003340B3 DNA binding domain
PfamPF023621.7E-9580648IPR003340B3 DNA binding domain
PfamPF128194.0E-22667802IPR024788Malectin-like carbohydrate-binding domain
PfamPF082630.017805827IPR013210Leucine-rich repeat-containing N-terminal, plant-type
SuperFamilySSF520581.93E-15816909IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.1E-18817908IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MSHLRLILLA VLSLVSSSLS QPSPPSAVLI DCGASASSVI DGRRWQSDED FVSSGTSRNV  60
SDQVLDQVLS TVRSFPLSLD GTRRKFCYVV GVSRGWKYMI RTTFFYGGVN GKDNPPPVFD  120
QIVDGTFWGV VNTTVDYADG LASYYEAVFL AQGKSISVCI ASNSYTTSDP FISALELVRL  180
DGTVYNSTDF GAFGLSLVAR HAFGYSGPII SLQNVASFGM EAMWSVAGLV LGALFAKLDS  240
TKQSEIGSFW FLEPSAFEDI QHGSXSRIFN TDLRANQIQP LEFTWPPMPL TKSVYYIALY  300
FAHDSDSLAD GSRVFDVSVN GITYYKELSV TPAGAVIFAS RWPLEGLTTL TLSPRSGSTL  360
APLINGGEMF ELISLGGKTL VRDGTTVNST EWLKKFLYAD CVFLLPCAVT ALNAIKSSFQ  420
NVPVDWNGDP CMPKNYSWSG VTCSEGPRIR IVALNLTNMG LSGSLAPEIA KLTALSSMFL  480
QNNNLTGQIP SNLLQKPGLE LRTSELKLSL HGFIQIVHDE LVKLMGGEXL KKQKKAKETK  540
ISKKNKKKVN TVCNDVEAGT SSLVPEFNVT IRKSHLLFLG TPKKFVDMHM PKETKLFKIL  600
AEGKKSWEVL YLATDTKSRF SAGWSRLARE LGLVVGDVCT FKLIKPTEIL LKVSRDDVVV  660
DDDDDDYADG TFWGVVNTTA NYADGLASYY EAVFLAQGKS ISVCIASNSY TTSDPFISAL  720
ELVRLDGTVY NSTDFGAFGL SLVARHAFGY SGPIIRFPDD EFDRFWEPYS LNSTVPNNRK  780
LEVSGFWNLP PSRIFNTDLR ANQNVPVDWN GDPCMPKNYS WSGVTCSEGP RIRIVALNLT  840
NMGLSGSLAP EIAKLTALSS IWLGNNSLSG SIPNFGSLKL LESVHLEDNR FSGNFPSFFG  900
GVPRLRELIS CAYCLLLLLK ILALSMEKT
Cis-element ? help Back to Top
SourceLink
PlantRegMap676720558
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693069.10.0leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510
TrEMBLV4M0040.0V4M004_EUTSA; Uncharacterized protein
STRINGXP_006408001.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.15e-48VERDANDI