PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676720004
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 829aa    MW: 93589.9 Da    PI: 7.9726
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676720004genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.94.6e-128332651
               HHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF 26 ELSvLCdaevaviifsstgklyeyss 51
               ELSvLCdaevavi+fss+g lyeys+
  676720004  8 ELSVLCDAEVAVIVFSSRGCLYEYSN 33
               9***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003199.1E-8731IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-7833IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.194835IPR002100Transcription factor, MADS-box
PfamPF037321.0E-1770177IPR005162Retrotransposon gag domain
PfamPF139763.2E-9330379IPR025724GAG-pre-integrase domain
PROSITE profilePS5099416.48379553IPR001584Integrase, catalytic core
PfamPF006651.1E-17395504IPR001584Integrase, catalytic core
Gene3DG3DSA:3.30.420.101.1E-23395546IPR012337Ribonuclease H-like domain
SuperFamilySSF530985.61E-36395550IPR012337Ribonuclease H-like domain
PfamPF077273.3E-24643711IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566728.45E-6645765No hitNo description
PfamPF077271.2E-9717777IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MELGVYAELS VLCDAEVAVI VFSSRGCLYE YSNIRSFRED QIGPSSPPVL SRSPHRHLLI  60
WIVRCNSLVK SWILNSVSAQ IYRSILRMND ATKIWRDLHD RFHLTNLPRT FNLTQEIQDL  120
RQGSLSLSDY FTTLKKLWSN LENSEEPEDT CTCGKAARFQ QKTERAKIVK FLAGLNEVYA  180
SIRRQIIMRK VLPSLAEKHG YHLDHPKGKG SGKPPASHVA AQVTMPSSPA SSSSNLGCLD  240
CSQLQSPSTS EASTSNQLAD TSGISFSQST LCFVGILSVS QNTMSTDTWV LDSGATHHVS  300
HDKNLFVSLD TFIAPWKSLR AGYSSYISVC ERSGGHWYWH KRLGHASFDR LDVISETLGT  360
KRHRNKDPAC CHICHLAKQK KLPCLSPNNM CLSNFELLHI DVWGPFSVET IEGYRYFLTI  420
VDDHSRATWI YFLCTKNEVL TVFHAFVTKV ENQYNARVKS VRSDNAPELK ISEFFQQKGI  480
VAFHSCPETP EQNSVVERKH QHILNVARAF MFQAQLPLSH WGDCVLTAVF VINRTPSVLL  540
ANKTPYELLT GKLPVYDQIR TFGCLCYGST SPKQRHKFQP RSRACVFLGY PAGYKGYKLM  600
DLESQKVFIS RNVIFHEDVF PLASSPATTD SLDFFTPSPL THSVAKGFTQ KEGLDYNATF  660
SPVAKLVSVQ FLLKVAASKK WYLRQLDISN AFLNGDLDEE IYMKIPDGYA ECTGKGEGDH  720
TLFTKSCVGG DFIAVLVYVD DIIMASTSEA ATVQLTNDLS QRLKLRDLGT LKYFFGLGDC  780
SHKFWDFYLL KEVCSGNPFY FWYAWLQAGI YSHDPESYFV QMVIDFLIL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676720004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454140.11e-145PREDICTED: uncharacterized protein LOC108825334
TrEMBLQ9XII71e-156Q9XII7_ARATH; Putative retroelement pol polyprotein
STRINGBra008452.1-P1e-129(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.13e-08MIKC_MADS family protein