PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676719664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 26838.9 Da PI: 6.2556 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.9 | 2.4e-05 | 28 | 75 | 1 | 52 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +r+++ rEr R+++N+ f eL + l + ++ Ka+iL +A++++k 676719664 28 KRVNKAVRERLKREHLNELFIELADTLELN----QQNSGKASILCEATRFLK 75 7999***********************997....566778889999999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.03E-5 | 25 | 76 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.3E-7 | 27 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.623 | 27 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-11 | 28 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGSKTPSTST DEANASVDER SRKGKVPKRV NKAVRERLKR EHLNELFIEL ADTLELNQQN 60 SGKASILCEA TRFLKDVFGQ IESLRKEQTS LLSESNYVTT EKNELKEETS VLETEISRLQ 120 SEIAARANQS KPDLNTSPAP EYHHQHYQQH PELASQYSGL PIFQGAGFQQ SAGTPPGATV 180 LVLPMQHDLQ TQDTSDLTGR VQTQMPIMYN SSIVSKPCPR YASAGDSWPS RLLGERLQAN 240 E |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676719664 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353385 | 0.0 | AK353385.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-41-O18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006404356.1 | 1e-159 | transcription factor bHLH47 | ||||
Swissprot | Q9SN74 | 1e-132 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | E4MXY8 | 1e-158 | E4MXY8_EUTHA; mRNA, clone: RTFL01-41-O18 | ||||
TrEMBL | V4LPS9 | 1e-158 | V4LPS9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006404356.1 | 1e-159 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11720 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 1e-135 | bHLH family protein |