PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676719324

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Dof

Protein Properties

Length: 265aa MW: 27702.6 Da PI: 8.4987

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676719324	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.8e-38	30	90	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rk k+s 676719324 30 QQEQLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGTRKAAKRS 90 6899****************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-30	4	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-33	32	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.003	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0042545	Biological Process	cell wall modification
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MTTSDSGESR RIAMRPHGVT TGNPPTNEQQ QEQLPCPRCD STNTKFCYYN NYNFSQPRHF 60 CKSCRRYWTH GGTLRDIPVG GGTRKAAKRS RTCSSSSSPV VVSTTTSSAG IRSVPLQATP 120 LLFPHSSISN GVTHTVTAPP LENDGKGSAL SLCGSFTSLL NQNANAATAT HGSGSVIGLS 180 GFGIGLGSGF DDVGFGLGRA VWPFSTVGDS ATTNVGSHGG HHSVSIPATW QFEGLESSNA 240 GGGFVPGEYF AWPDLSITTP GNSLK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00402	DAP	Transfer from AT3G50410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676719324

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006404032.1	1e-138	dof zinc finger protein DOF3.4
Swissprot	Q39088	1e-124	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A1J3GFF3	1e-141	A0A1J3GFF3_NOCCA; Dof zinc finger protein DOF3.4 (Fragment)
TrEMBL	A0A1J3K789	1e-141	A0A1J3K789_NOCCA; Dof zinc finger protein DOF3.4
STRING	Bostr.6864s0202.1.p	1e-141	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-120	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]