PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676718904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 219aa MW: 25622.5 Da PI: 6.3803 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.5 | 3e-20 | 61 | 114 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le F ++++ e++e+LA++lgL+ rqV vWFqNrRa++k+ 676718904 61 KRKLSDEQVKMLEMSFGDEHKLESERKERLASELGLDPRQVAVWFQNRRARWKN 114 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 122.8 | 1.7e-39 | 60 | 151 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqvk+LE+sF e+kLe+erK++la+eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+++++++ e++rL++ev +L+e+l++ 676718904 60 RKRKLSDEQVKMLEMSFGDEHKLESERKERLASELGLDPRQVAVWFQNRRARWKNKRLEDEYTKLKNEHENVVVEKCRLDSEVLHLKEQLHD 151 8****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.3E-18 | 52 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.941 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-19 | 58 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.54E-16 | 60 | 116 | No hit | No description |
Pfam | PF00046 | 1.6E-17 | 61 | 114 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 66 | 114 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.8E-6 | 86 | 95 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.8E-6 | 95 | 111 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MNSQNVNDHN LLLISQMYPN VYASSPQQGE SKPVRPRRRR KNKRVAMAEE GGDGSNGWFR 60 KRKLSDEQVK MLEMSFGDEH KLESERKERL ASELGLDPRQ VAVWFQNRRA RWKNKRLEDE 120 YTKLKNEHEN VVVEKCRLDS EVLHLKEQLH DAEREIQRLA QRVEGASSNS PISSSVSVEA 180 TQTKPFFGDY EVEYDGDGYE NLFYSPEYTT GLEWMSQFM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 44 | RPRRRRKNKRV |
2 | 35 | 42 | PRRRRKNK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676718904 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437401.1 | 1e-132 | PREDICTED: homeobox-leucine zipper protein ATHB-21-like isoform X2 | ||||
Swissprot | Q9ZU70 | 1e-122 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | V4NUX9 | 1e-130 | V4NUX9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006409134.1 | 1e-129 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 1e-109 | homeobox protein 21 |
Publications ? help Back to Top | |||
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