PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676718276
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TALE
Protein Properties Length: 622aa    MW: 67223.9 Da    PI: 9.3682
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676718276genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.94e-094054372254
                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                ++yp+ +++  LAk++gL+ +qV++WF N R +
  676718276 405 HPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 437
                89*****************************87 PP
2BELL111.93.5e-36259327472
       BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                e+ kkk+kL+s+l+eV+krYkqy+eqlq+v++sFe+vaglg+a+pY+sl lka+SrhF+cLk+ai+eq+
  676718276 259 ENGKKKSKLISMLDEVYKRYKQYYEQLQAVMGSFECVAGLGHAAPYASLTLKALSRHFKCLKNAITEQL 327
                889****************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-68198325IPR006563POX domain
PfamPF075267.7E-35203324IPR006563POX domain
CDDcd000862.37E-11381442No hitNo description
SMARTSM003894.0E-9381445IPR001356Homeobox domain
SuperFamilySSF466891.03E-16383448IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-27385445IPR009057Homeodomain-like
PfamPF059202.0E-18398437IPR008422Homeobox KN domain
PROSITE profilePS5007111.645400441IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MYRYMLDRAS KRKQKKPLSL SLLTSRFTVT IISYTVTLSS LSFFYISKSS FPMADAYEPY  60
HVLQQSRRDK LRIPSLDSHF HFHHPPPSSS GGGSVSNNHM SNPSYSNFMG FLGGPSSSSS  120
TAVAVAGDHS FNAGLSSGDV LVFKPEPLSL SLSSHPRLAY DLGVPGVVNS GFCRSAAEAA  180
AAAVTVASRS SGPLGPFTGY ASILKGSRFL KPAQMLLDEF CNVGRGIYTD KFIDDDDSSL  240
LFDPTVENLC GVSDAGGGEN GKKKSKLISM LDEVYKRYKQ YYEQLQAVMG SFECVAGLGH  300
AAPYASLTLK ALSRHFKCLK NAITEQLQFS TNNKIQQQQC GHVMNSENKT ESLRFGGSDS  360
SRGLCSAGQR HGFPDHHAPV WRPHRGLPER AVTVLRAWLF DHFLHPYPTD TDKLMLAKQT  420
GLSRNQVSNW FINARVRVWK PMVEEIHMLE TRQSQRSSSS TWRDERSTTT VFPDNNNPSS  480
SAAQPRVNNN SSPARRVRND DVPGTNNNNN NNFMNAGNGG SGGGGGAVSY SYGIASSNVP  540
GMSSSTNGGV SLTLGLHHQI GLPEPFPMTT AQRFGLDGGS SGGGGGGESY GGGGGYEGQN  600
RQFGRDFIGG SNHQSFLHDF VG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A7e-17387445159Homeobox protein Meis2
5bng_B7e-17387445159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676718276
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5194910.0AJ519491.1 Arabidopsis thaliana mRNA for homeodomain protein vaamana (vaamana gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122816.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM80.0BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLV4L9080.0V4L908_EUTSA; Uncharacterized protein
STRINGXP_006398666.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56882746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.10.0TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]