PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676718238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MYB | ||||||||
Protein Properties | Length: 225aa MW: 25549.5 Da PI: 5.4639 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.5 | 4.2e-10 | 27 | 73 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 WT+eE +++ +a + l + +W++Ia+ ++ g+t +++ r+ 676718238 27 TWTAEENKRFEKALAFLDDNdnleSWSKIAALIP-GKTVDDVIKRYKE 73 5*****************99**************.**********975 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.6e-16 | 151 | 195 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky 676718238 151 PWTEEEHRRFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 195 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-6 | 17 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 7.533 | 23 | 77 | IPR017884 | SANT domain |
SMART | SM00717 | 8.6E-7 | 24 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.31E-8 | 27 | 74 | No hit | No description |
Pfam | PF00249 | 4.6E-8 | 27 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.3E-9 | 27 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.32 | 144 | 200 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-17 | 146 | 199 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-18 | 147 | 199 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.5E-13 | 148 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-13 | 148 | 198 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.85E-11 | 151 | 196 | No hit | No description |
Pfam | PF00249 | 4.0E-13 | 151 | 195 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSSTNGGFEF FSPENTNWTF QEVKEATWTA EENKRFEKAL AFLDDNDNLE SWSKIAALIP 60 GKTVDDVIKR YKELEDDVSD IEAGLVPIPG YGCNASSETT GGDCFFGLEN SAGCGYVYGY 120 DYVVGGKRSS PATTDGFRLP MPEKERKKGV PWTEEEHRRF LMGLKKYGKG DWRNIARNFV 180 TTRTPTQVAS HAQKYFIRQL TDCKDKRRFA FEPAASYYNA FPQWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676718238 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519530 | 1e-78 | AY519530.1 Arabidopsis thaliana MYB transcription factor (At5g01200) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398645.1 | 1e-132 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-66 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | V4LJX8 | 1e-130 | V4LJX8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006398645.1 | 1e-131 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14884 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01200.1 | 1e-111 | MYB family protein |
Publications ? help Back to Top | |||
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