PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676718002

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HD-ZIP

Protein Properties

Length: 214aa MW: 24995.2 Da PI: 8.4142

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676718002	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.4e-18	76	130	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ ++t+eql Le+ F+++ ++ +++ +L+k+l+++ rqV vWFqNrRa++k 676718002 76 KKKKKLTNEQLALLEQSFQEDIKLESDRKLKLSKELRMQPRQVAVWFQNRRARWK 130 68889*************************************************9 PP
2	HD-ZIP_I/II	113.5	1.3e-36	76	164	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk++l++eq++lLE+sF+e+ kLe++rK +l++eL++qprqvavWFqnrRAR+k k+lE+ ye+L+++yd +++en++L++ev++Lr 676718002 76 KKKKKLTNEQLALLEQSFQEDIKLESDRKLKLSKELRMQPRQVAVWFQNRRARWKVKHLEESYESLRQEYDVVSRENQMLHDEVRKLRG 164 59*************************************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.27E-18	59	131	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-17	69	138	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.989	72	132	IPR001356	Homeobox domain
SMART	SM00389	2.7E-16	75	136	IPR001356	Homeobox domain
CDD	cd00086	5.97E-15	76	133	No hit	No description
Pfam	PF00046	4.7E-15	76	130	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	107	130	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MEWSSTSNVE NMRVAFMPLQ WLESNSSNSL HSFSYDPYAG NSSMPVLTQT GPVSVPESSE 60 KITNVCQSPS NDDEMKKKKK LTNEQLALLE QSFQEDIKLE SDRKLKLSKE LRMQPRQVAV 120 WFQNRRARWK VKHLEESYES LRQEYDVVSR ENQMLHDEVR KLRGIILKDH LMKRQPNLNN 180 NQIAGGSQMY GTDQYSNPMF VAWPPIPSQQ PYPW

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676718002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013666190.1	1e-135	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	9e-90	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A0D3EI29	1e-130	A0A0D3EI29_BRAOL; Uncharacterized protein
STRING	Bo9g181710.1	1e-131	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-84	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]