PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676717998
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26882.3 Da    PI: 9.2399
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676717998genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-1885137456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                + ++t+ ql  Le+ F+ + +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  676717998  85 KKRLTSGQLASLERSFQDEIKLDSDRKLKLSRELGLQPRQIAVWFQNRRARWK 137
                45699***********************************************9 PP
2HD-ZIP_I/II114.46.9e-3784174292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kk+rl++ q+++LE+sF+ e kL+++rK +l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd +++e+++L++ev++Lr+ l+
    676717998  84 KKKRLTSGQLASLERSFQDEIKLDSDRKLKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHEEVKKLRALLR 174
                  9*****************999******************************************************************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-1871141IPR009057Homeodomain-like
PROSITE profilePS5007116.63379139IPR001356Homeobox domain
SMARTSM003892.6E-1681143IPR001356Homeobox domain
CDDcd000866.07E-1584140No hitNo description
PfamPF000468.4E-1685137IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-1986146IPR009057Homeodomain-like
PRINTSPR000315.8E-5110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000315.8E-5119135IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEWSTTSNVE NVRIAFMPPP WPESSSFNSL HSSSYDPYSG FCWVTAGNLY TPADMQTGPV  60
VSVPESEKII NAYRFPSNNN EMVKKKRLTS GQLASLERSF QDEIKLDSDR KLKLSRELGL  120
QPRQIAVWFQ NRRARWKAKQ LEQLYDSLRQ EYDVVSREKQ MLHEEVKKLR ALLRDQGPVK  180
KQISGGTSKD TTEIPSVVIA HPRTDNHITG GNQIYGIDQY NNPMVIASSC WSPYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676717998
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325221e-124AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012411.11e-143putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR01e-141ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLV4LKE41e-141V4LKE4_EUTSA; Uncharacterized protein
STRINGXP_006398835.11e-142(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-135homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]