PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676717914
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family E2F/DP
Protein Properties Length: 404aa    MW: 44061.7 Da    PI: 6.3782
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676717914genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.51.4e-25136214971
    E2F_TDP   9 ltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                l+  fl+++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  676717914 136 LSFGFLSVCEKVESkGRTTYNEVADELVAEfalpnndgtspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 214
                6778*********99*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094046.3E-1331404IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.4E-4295110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.7E-2999214IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.0E-21134214IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.99E-18136215IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.4E-42143220IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.03E-42219322IPR014889Transcription factor DP, C-terminal
SMARTSM011381.4E-62221363IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.23E-41221331No hitNo description
PfamPF087812.5E-42222340IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MTNSGSNSNH NHPDDASAKN PSTRSWGTAV SGQSVSTSGS MGSPSSRSEQ TTTVATSASD  60
SAFVQLNNLD IQGDDAASQG ASGGKKKKKR GQRAAGPDKT GRGLRQFSMK GLSFLLPSII  120
KFIAMSCGSN LNSSSLSFGF LSVCEKVESK GRTTYNEVAD ELVAEFALPN NDGTSPDQQQ  180
YDEKNIRRRV YDALNVLMAM DIISKDKKEI QWRGLPRTSL SDIEELKAER LSLRSRIEKK  240
TAYSQELEEQ YVGLQNLIRR NEHLYSSGNA PSGGVALPFI LVQTRPHATV EVEISEDMQL  300
VHFDFNSTPF ELHDDNFVLK TMKFCDQPPL NNGHNNSQKT CNNNGGTSTD PAPPQTGDMH  360
QSHPQPQEHE LHSQPQIIPT PVTNNDTDTA PVAGIITSSV KHEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3093219193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676717914
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937330.0AB493733.1 Arabidopsis thaliana At5g03415 mRNA for hypothetical protein, partial cds, clone: RAAt5g03415.
GenBankAJ2945320.0AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene).
GenBankAK2281480.0AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08.
GenBankAY0860180.0AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452220.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY20.0DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1J3GX900.0A0A1J3GX90_NOCCA; Transcription factor-like protein DPB
STRINGBostr.2128s0112.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-165Transcription factor DP