PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676717436 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NAC | ||||||||
Protein Properties | Length: 470aa MW: 53002.4 Da PI: 4.616 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.1 | 3.1e-31 | 58 | 192 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkat 86 lp+G++F+P+d e++++ L+k+ + g + ++ e+i++v+ i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + +W++t 676717436 58 LPRGVKFDPSDPEIIWHLLAKSgLLGLSshpfID--EFIPTVNqddgICYTHPKNLP-GVKHDGTVSHFFHRAIKAYSTGTRKRRKIHdddfgDVRWHKT 154 799************9999988544444443422..33544433345**********.677788999******************86555655889**** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g++k+v+ +g + g+kk++v+y g+a kt+Wvmh+y+l 676717436 155 GRTKPVVL-DGVQRGCKKIMVLYGGKAV---KTNWVMHQYHL 192 ********.99************76665...6********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-37 | 43 | 211 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.759 | 58 | 211 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-12 | 59 | 192 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MAGRSWLVDK SRIATKIISA SGNSDPRQVV YNSNPTRHCP NCHHVIDNSD EVDDWPGLPR 60 GVKFDPSDPE IIWHLLAKSG LLGLSSHPFI DEFIPTVNQD DGICYTHPKN LPGVKHDGTV 120 SHFFHRAIKA YSTGTRKRRK IHDDDFGDVR WHKTGRTKPV VLDGVQRGCK KIMVLYGGKA 180 VKTNWVMHQY HLGTDEDEKE GEYVVSKIFY QQPVLKQGDK AEQEVSENIF GATTPKADPV 240 TPKLFTPEPR QAVRLCSDSP FANDYANPHH LANDYAAPHD YVTAEEVSLA ETSEAIYMED 300 EVQGVQRNHE RPSSEDDLEF GTGIEIRENE MTADKEHQEK DKEDGNDQED REKGKEDEGQ 360 AEEDPNWLDS GGSQFILDSQ QLVEALSLCN DLLEDRDENT NNGGLRNKQP CFGDYAHLGT 420 EDFKRDLEDC QKLVLDPSNI ELDTPPEFRL SQLEFGSQES FLAWGTGKID |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676717436 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221266 | 0.0 | AK221266.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-13-I20. | |||
GenBank | AK228316 | 0.0 | AK228316.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-74-M01. | |||
GenBank | BT010450 | 0.0 | BT010450.1 Arabidopsis thaliana At1g25580 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415888.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | V4MR78 | 0.0 | V4MR78_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415888.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9707 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |