PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676717228
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 269aa    MW: 30882.2 Da    PI: 10.0922
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676717228genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.2e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll+++v+ +G g+W+++ar  g++R +k+c++rw +yl
        676717228 15 KGPWTSEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 62
                     79********************************************97 PP
2Myb_DNA-binding52.61e-1668112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
        676717228  68 RGQITPHEESIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 112
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.241062IPR017930Myb domain
SuperFamilySSF466893.44E-3013109IPR009057Homeodomain-like
SMARTSM007174.1E-161464IPR001005SANT/Myb domain
PfamPF002495.0E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-241669IPR009057Homeodomain-like
CDDcd001678.13E-121762No hitNo description
PROSITE profilePS5129424.51263117IPR017930Myb domain
SMARTSM007174.7E-1567115IPR001005SANT/Myb domain
PfamPF002496.0E-1468112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2470116IPR009057Homeodomain-like
CDDcd001679.92E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSWWGVKGVG EAWRKGPWTS EEDRLLIEYV RVHGEGRWNS VARLAGLKRN GKSCRLRWVN  60
YLRPDLKRGQ ITPHEESIIL ELHAKWGNRW STIARSLPGR TDNEIKNYWR THFKTKAKPV  120
TNKAEKTKTL LLKRQQFKQQ RQMELQKDKQ LFQFDQLDMK KIMSLLENNS SSTSRSDCVD  180
VFYAPKKMTH SLTASGCINP NSLEEHLQGR FAPASIPETT AINEDNAIWD GFWNLDVVDG  240
NGGNMDIVAA TAACGPRKPY IHNLVTPFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261511727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676717228
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285781.21e-152transcription repressor MYB6
TrEMBLR0GP771e-150R0GP77_9BRAS; Uncharacterized protein
STRINGXP_006285781.11e-151(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-128myb domain protein 79