PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676716648
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 310aa    MW: 35179.6 Da    PI: 7.1131
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676716648genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.61.6e-5551311129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhPtdeel+++yL++kv++  ++  +++ +vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ +g lv
  676716648   5 LPPGFRFHPTDEELITHYLCRKVSDIGFTG-KAVVDVDLNKCEPWDLPAKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIYR-SGVLV 102
                79*************************999.88***************999999****************************************.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrle 129
                g+kktLvfykgrapkgek++Wvmheyrle
  676716648 103 GMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131
                ***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-643151IPR003441NAC domain
PROSITE profilePS5100560.1435151IPR003441NAC domain
PfamPF023656.4E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT HYLCRKVSDI GFTGKAVVDV DLNKCEPWDL PAKASMGEKE  60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV LVGMKKTLVF YKGRAPKGEK  120
SNWVMHEYRL ENKQPFKPAK EEWVVCRVFQ KSTAAKKPPE QQPQSSQPSF GSPCDANSSM  180
ANEFEDIELP NLNSNSSTVD YNHIHQYSQN GVYPEENITS TAGLHMNMNM NMATNIPSWT  240
SSLLGPPLSP INSLLLKAFQ IRNSYNFPKE MISNINPSLL QQGVSNIMQN GSSSSQPQAQ  300
EEAFNMDSIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-59415716171NO APICAL MERISTEM PROTEIN
1ut4_B9e-59415716171NO APICAL MERISTEM PROTEIN
1ut7_A9e-59415716171NO APICAL MERISTEM PROTEIN
1ut7_B9e-59415716171NO APICAL MERISTEM PROTEIN
3swm_A1e-58415719174NAC domain-containing protein 19
3swm_B1e-58415719174NAC domain-containing protein 19
3swm_C1e-58415719174NAC domain-containing protein 19
3swm_D1e-58415719174NAC domain-containing protein 19
3swp_A1e-58415719174NAC domain-containing protein 19
3swp_B1e-58415719174NAC domain-containing protein 19
3swp_C1e-58415719174NAC domain-containing protein 19
3swp_D1e-58415719174NAC domain-containing protein 19
4dul_A9e-59415716171NAC domain-containing protein 19
4dul_B9e-59415716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676716648
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266581e-154AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24.
GenBankCP0026861e-154CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022576079.10.0NAC domain-containing protein 100
SwissprotQ9FLJ22e-83NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A397ZCG50.0A0A397ZCG5_BRACM; Uncharacterized protein
STRINGBra022319.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.10.0NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]