 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
676716642 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
HB-other |
| Protein Properties |
Length: 354aa MW: 39235.8 Da PI: 8.2198 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676716642 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 14.3 | 7e-05 | 36 | 53 | 38 | 55 |
TS-HHHHHHHHHHHHHHH CS
Homeobox 38 gLterqVkvWFqNrRake 55
++ +q+ +WFqNrR+
676716642 36 VVQFKQIWNWFQNRRYAL 53
56779**********965 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MEAILLQHNT AMPGRHILEA LAEKFSETVE RKGKIVVQFK QIWNWFQNRR YALRARGNKA 60
PGKLNVSSMP RGVDLTNPMR NVLQPSSGPK TTHMTGNLPV MTPAPSVPGV MRSGSDNSYL 120
EFEAKSARDG AWYDVQAFLA HRNLEIGDPE VQVRFAGFEV EEDEWINVKK HVRQRSLPCE 180
ASECVAVLAG DLVLCFQEGK DQALYFDAIV LDAQRRRHDP RPVRGWMLIS NLCFYLLAPF 240
GFMVWESEAN SSSLLPIWIS FPLSQQEIVP LRKICRRPET DYRLQQLHSA ANDFANSNQL 300
QKPAPDVAAK PPLSQSGASV PIVPPDVKDP SLSAASATPV QPSSNVATVP AGSA
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 2e-34 | 120 | 279 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 2e-34 | 120 | 279 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 2e-34 | 120 | 279 | 4 | 134 | SHH1 SAWADEE |
| 4iur_B | 2e-34 | 120 | 279 | 4 | 134 | SHH1 SAWADEE |
| 4iut_A | 2e-34 | 120 | 279 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 2e-34 | 120 | 279 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 2e-34 | 120 | 279 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 2e-34 | 120 | 279 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 2e-34 | 120 | 279 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 2e-34 | 120 | 279 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY093042 | 0.0 | AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds. |
| GenBank | BT003428 | 0.0 | BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G18380.3 | 0.0 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
