PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676716582
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 848aa    MW: 95649.4 Da    PI: 5.3268
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676716582genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-08462506246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +WT+eE+  l   +++ G  +W  Ia  +g++Rt+ qc  r+q 
        676716582 462 SPWTAEEENNLRLIIQENGFTDWLVIAVSLGTNRTPFQCLARYQR 506
                      58*****************************************96 PP
2Myb_DNA-binding43.19.8e-14514558146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+ WT+eEd++l  av+++G ++W ++a+ +  gR + qc +rw k
        676716582 514 RKEWTAEEDDQLRSAVELFGEKNWQAVANALE-GRAGTQCSNRWKK 558
                      789*****************************.***********98 PP
3Myb_DNA-binding49.11.3e-15568612247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+++ eEd++l  av+++G  +W++Ia+ ++ gRt+ qc++rw + 
        676716582 568 GKFSSEEDKRLTVAVTLFGAQNWHKIAHFVP-GRTPTQCRERWANC 612
                      79*****************************.***********885 PP
4Myb_DNA-binding537.7e-17619663146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+WT+eEd +l +a++++  g+W++Ia++++ +Rt+ qc+ rw +
        676716582 619 RGKWTKEEDAKLREAITEHVIGNWSKIASEVP-RRTDSQCRRRWMS 663
                      89******************************.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.761359455IPR017877Myb-like domain
SMARTSM007170.88363457IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-8366382IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-8428467IPR009057Homeodomain-like
SuperFamilySSF466891.32E-13438504IPR009057Homeodomain-like
PROSITE profilePS500908.676456508IPR017877Myb-like domain
SMARTSM007173.0E-8460510IPR001005SANT/Myb domain
PfamPF002495.6E-8462506IPR001005SANT/Myb domain
CDDcd001674.16E-6463508No hitNo description
Gene3DG3DSA:1.10.10.606.9E-12468522IPR009057Homeodomain-like
SuperFamilySSF466891.59E-19491565IPR009057Homeodomain-like
PROSITE profilePS5129420.427509564IPR017930Myb domain
SMARTSM007174.4E-13513562IPR001005SANT/Myb domain
PfamPF002491.0E-12514558IPR001005SANT/Myb domain
CDDcd001671.61E-10516560No hitNo description
Gene3DG3DSA:1.10.10.602.1E-16523562IPR009057Homeodomain-like
PROSITE profilePS5129413.699565613IPR017930Myb domain
SMARTSM007171.5E-12566615IPR001005SANT/Myb domain
PfamPF002491.5E-13568612IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-19568616IPR009057Homeodomain-like
CDDcd001678.90E-11569611No hitNo description
SuperFamilySSF466891.35E-25593668IPR009057Homeodomain-like
PROSITE profilePS5129425.315614669IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-20617664IPR009057Homeodomain-like
SMARTSM007172.6E-14618667IPR001005SANT/Myb domain
PfamPF002491.2E-14619664IPR001005SANT/Myb domain
CDDcd001671.84E-13621664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MNRESLYEAD DEEEDEDEEE DDIGEDLDDL RRACIVSEPN SHEVIAKSGS VEPDGGGGGG  60
GGIPVDSENE EDFERLISLK SQLAPSTELT SGPAIGLSLP LDSESDDDFE FELLRSLKGQ  120
LTFPTAGCLP HMTLSDDDDD NSFETLRAIR RRFSAYANFD PDEAFKNDSP GKKKQVLASD  180
NETSSEILSR SNTCESFPDH GRSVVTLSHS EGSEAGHSVD LHQNTAIVPF DQTSQSSLLP  240
PASSSFPESA QAFVDAIRRN RAYQKFLRKK LTEIEAKIEQ NEKLQKNVKI VKDFQASCKR  300
ITKQALSQGK DPRVQLISTR KCRPCDSSED NDKKISPLTF GPPENPCVAN YKMSLKKYPV  360
SVDRRSWSKE ENENLAKGLI QQVQETLLNE AIERSSDFQG STDHIDTINE SIKNLEITPE  420
MIRQFLPKVN WDQLASLYFK DRSAAECEAR WMSSEDPLIN HSPWTAEEEN NLRLIIQENG  480
FTDWLVIAVS LGTNRTPFQC LARYQRSLNA DILRKEWTAE EDDQLRSAVE LFGEKNWQAV  540
ANALEGRAGT QCSNRWKKSL HPTRKRVGKF SSEEDKRLTV AVTLFGAQNW HKIAHFVPGR  600
TPTQCRERWA NCLDPNVNRG KWTKEEDAKL REAITEHVIG NWSKIASEVP RRTDSQCRRR  660
WMSLYPHQVP LLQEATRLRK EAIVGNFVDR ESERPALLAG DFLALPEISF EPEPEIVSPK  720
KKRKARPKIS NGGCESEASC AAATERQPKR RRKGLERCSG AVCRQENESV CENDENNGGE  780
VRSLEWHSEN QDTVKEKQRR RRKSVAETSN NSTVTTNCSE VIAGVKKLKP RRRKVSAIVP  840
FENQDAPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-274306698159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-274306698159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1829833PRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676716582
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013685972.10.0myb-like protein L
TrEMBLM4E0I30.0M4E0I3_BRARP; Uncharacterized protein
STRINGBra022280.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1