PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676715510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 396aa MW: 43735.6 Da PI: 5.173 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29 | 1.9e-09 | 238 | 286 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq 676715510 238 NSHSLAERVRREKISERMKYLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 286 58*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.03E-17 | 233 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.07E-10 | 233 | 290 | No hit | No description |
PROSITE profile | PS50888 | 15.529 | 235 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-16 | 236 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 238 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-9 | 241 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MDMNDKDEND VNSVADWRIS GSDPPVSYLP EENPMSICSP SQMMDSSRQN LWHDGGGFNV 60 HTEAGTSNVM ASFRGNIERP LEMGWNMAQF PADSGFTERA AKFSLFGCGS FSEMMMNQHS 120 LGGPESVGLF LQDTEIASSS KLADGEPLKD ASMVVKDRSN GSSNVSEDSN SSGGNGKKRK 180 RVEKVSEADQ SRRAQEDNKM QKDEQSPNAN KTTSGNQASD PLKDGYIHMR ARRGQATNSH 240 SLAERVRREK ISERMKYLQD LVPGCDKVTG KAVMLDEIIN YVQSLQCQIE FLSMKLSTVN 300 PMLDFNLESL IAKDALQSSA PTFPQSMSML YPPLSYLSQT GLMQPNISSM SPLNEGLKRQ 360 EIHGYESDHH NDVHMNHGIG TAPDHENVTA NRKVEP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676715510 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ630483 | 0.0 | AJ630483.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g26260. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415908.1 | 0.0 | transcription factor bHLH76 | ||||
Swissprot | Q9C670 | 0.0 | BH076_ARATH; Transcription factor bHLH76 | ||||
TrEMBL | V4MR96 | 0.0 | V4MR96_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.12659s0370.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16689 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26260.2 | 0.0 | cryptochrome-interacting basic-helix-loop-helix 5 |
Publications ? help Back to Top | |||
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