PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676715384

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

G2-like

Protein Properties

Length: 463aa MW: 53292.5 Da PI: 7.9945

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676715384	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	34.9	3.4e-11	114	140	1	27
G2-like 1 kprlrWtpeLHerFveaveqLGGsekA 27 k rl+W++eLH+rF++av+qLGG++ 676715384 114 KRRLKWSCELHHRFIDAVNQLGGPNSS 140 68*********************9875 PP
2	G2-like	38.8	2.1e-12	161	190	26	55
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPk +l++++++ Ltl+h+kSHLQkYRl 676715384 161 EATPKGLLRILEIPELTLYHLKSHLQKYRL 190 69***************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05938	6.1E-15	41	119	IPR010264	Plant self-incompatibility S1
Gene3D	G3DSA:1.10.10.60	9.5E-23	112	192	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.05E-9	113	193	IPR009057	Homeodomain-like
Pfam	PF14379	2.6E-19	251	297	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MASLTNNHII FVLLSLFILK TSSSFGNHSS SDGFLPFAPK HVVIYNNLTT KATLRAHCTN 60 KKIDLGVKDL LPGGSFDFRF HVNLRKTTRY ICTFEWPGNK IMDNDKNHKA HDSKRRLKWS 120 CELHHRFIDA VNQLGGPNSS VLVPFVLLKP YYKGIKCVWL EATPKGLLRI LEIPELTLYH 180 LKSHLQKYRL GMSERFVGNK QHDSKSQECQ SQKDFGDQLD ITVTEEKDDQ PNTYSFLKFN 240 FFVFYKSKNL QIKEAIEIQL EVQKNLHEQI EVQRQLQVRI EAQAKYLQSV LVKAQETFSA 300 HTSSNISTDF LRPDLCGVAS LANRSGLSFP FSELTQADED EEIEEEGGFL ESKIPENKGV 360 RQWRSSVDSS LTPSESSEAK TGFDFMSVRK RSNEIQLMKI EPEEVMEREK REWSSFCCVE 420 QPIRKRAFRG HDGEDLALGL NSFKDMETCS KSDQTKRIRF QET

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MASLTNNHII FVLLSLFILK TSSSFGNHSS SDGFLPFAPK HVVIYNNLTT KATLRAHCTN  60
KKIDLGVKDL LPGGSFDFRF HVNLRKTTRY ICTFEWPGNK IMDNDKNHKA HDSKRRLKWS  120
CELHHRFIDA VNQLGGPNSS VLVPFVLLKP YYKGIKCVWL EATPKGLLRI LEIPELTLYH  180
LKSHLQKYRL GMSERFVGNK QHDSKSQECQ SQKDFGDQLD ITVTEEKDDQ PNTYSFLKFN  240
FFVFYKSKNL QIKEAIEIQL EVQKNLHEQI EVQRQLQVRI EAQAKYLQSV LVKAQETFSA  300
HTSSNISTDF LRPDLCGVAS LANRSGLSFP FSELTQADED EEIEEEGGFL ESKIPENKGV  360
RQWRSSVDSS LTPSESSEAK TGFDFMSVRK RSNEIQLMKI EPEEVMEREK REWSSFCCVE  420
QPIRKRAFRG HDGEDLALGL NSFKDMETCS KSDQTKRIRF QET

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676715384

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018509350.1	1e-141	PREDICTED: myb family transcription factor PHL8-like isoform X1
Swissprot	F4I274	3e-85	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A3N6Q2G9	1e-139	A0A3N6Q2G9_BRACR; Uncharacterized protein
STRING	Bra016289.1-P	1e-130	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3878	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.2	6e-82	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]