PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676715190
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ARF
Protein Properties Length: 400aa    MW: 46037.4 Da    PI: 7.7438
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676715190genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.52.2e-22137236197
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f kvl+ sd+ ++g l+l k++a e+     +++++ s++++ +d++g +W++k+i+r++++r+++t+GW+ Fv  ++L +gD++vF +   +++e +v+
  676715190 137 FTKVLSVSDTKRQGSLSLIKRHAVEClppldMSQPTPSQDIIAKDLHGHEWKFKHIFRGTPQRHLFTSGWSTFVTKQNLVAGDSFVFIR--GENGESRVG 234
                89*****************************88888999*************************************************3..377777888 PP

                EE CS
         B3  96 vf 97 
                + 
  676715190 235 IK 236
                75 PP
2Auxin_resp85.21.3e-28263342183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a +a+++k++F v Y+Pr+  s+Fv+++ek+ +a+++k+ +G+Rf m+fe+ d++e+++sGt+v ++d+ + +W+nS+WrsLk
   676715190 263 ALNAITNKCMFVVSYKPRS--SQFVINFEKFIDAVNKKFNIGSRFSMKFEGSDFNEIKYSGTIVEIKDFCT-HWNNSEWRSLK 342
                 6799**************6..9**********************************************776.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.01E-27133236IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-35133251IPR015300DNA-binding pseudobarrel domain
CDDcd100172.65E-19135237No hitNo description
PfamPF023624.4E-20137236IPR003340B3 DNA binding domain
SMARTSM010191.0E-19137239IPR003340B3 DNA binding domain
PROSITE profilePS5086312.21137239IPR003340B3 DNA binding domain
PfamPF065078.6E-26263342IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MASNQIINSQ PELLGTDQSD KYMYNKLWQL CAGTLYDLPE IGESVYYFLQ GHIEQASFLF  60
SYFYSFLLVT TINDDLCQQR PIFDLPSKLR CKVFSIERKV ETNNNEIYAK ISLLPDTSEV  120
EIPIPNCDNE VQNIKYFTKV LSVSDTKRQG SLSLIKRHAV ECLPPLDMSQ PTPSQDIIAK  180
DLHGHEWKFK HIFRGTPQRH LFTSGWSTFV TKQNLVAGDS FVFIRGENGE SRVGIKKAVY  240
QQVNIPSSVI SKESMHHSVI ATALNAITNK CMFVVSYKPR SSQFVINFEK FIDAVNKKFN  300
IGSRFSMKFE GSDFNEIKYS GTIVEIKDFC THWNNSEWRS LKVQWDESAN IPRPDKVSPW  360
EIEPLTPASN ILESQFLKNE RQREVHEFGS NGWCRCGKKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1212336519355Auxin response factor 1
4ldy_B1e-1212336519355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676715190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022543938.10.0auxin response factor 22-like
RefseqXP_022544007.10.0auxin response factor 22-like
SwissprotQ9LQE81e-162ARFN_ARATH; Putative auxin response factor 14
TrEMBLA0A397YY970.0A0A397YY97_BRACM; Auxin response factor
STRINGBra027944.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35540.11e-163auxin response factor 14