PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676715028
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ARF
Protein Properties Length: 583aa    MW: 63573.8 Da    PI: 5.2335
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676715028genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.5e-23123224199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+ltpsd+++ g +++p+ +a++          ++ +  +l ++d +g sW++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF++  +s  +++
  676715028 123 FAKILTPSDANNGGGFSVPRYCADSVfppldfqADPPVQ--KLFITDIHGFSWDFRHIYRGTPRRHLLTTGWSKFVNGKKLIAGDSVVFMR--KSVDQMF 218
                89*********************999*****95444444..8************************************************4..4677789 PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++v+r+
  676715028 219 IGVRRA 224
                999986 PP
2Auxin_resp75.21.8e-25281357183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+++as++ +F+vvY+P a++s+Fvv++e+ve+++ + +++G+R+kma+etedss++++ +G+v+++ +       +S+W++L+
   676715028 281 AISRASKGLPFDVVYYPTAGWSDFVVRAEDVEASMAIYWTPGTRVKMAMETEDSSRITWfQGIVTSTFQ-------GSPWKQLQ 357
                 567899*****************************************************99**998877.......66666664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-32113224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-29114228IPR015300DNA-binding pseudobarrel domain
CDDcd100176.18E-19123219No hitNo description
PfamPF023621.1E-20123224IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534123225IPR003340B3 DNA binding domain
SMARTSM010192.1E-19123225IPR003340B3 DNA binding domain
PfamPF065079.1E-20282357IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MSPPSGPTDI PREVDPRIWR ACAGASVQIP TLFSRVYYFP QGHVEHCCAS STAISSSTAP  60
PVPCVVSSIE LLADPITDEV FAHLSLQPVP PEQFIPPTLY GFSGRRNDDD DDEQNNNNKV  120
ITFAKILTPS DANNGGGFSV PRYCADSVFP PLDFQADPPV QKLFITDIHG FSWDFRHIYR  180
GTPRRHLLTT GWSKFVNGKK LIAGDSVVFM RKSVDQMFIG VRRAPISNNG GTSYYGGGGG  240
GDEYFSSGYY SNIAKEEDGS GKKGFRRIGK GKLTAEAVSE AISRASKGLP FDVVYYPTAG  300
WSDFVVRAED VEASMAIYWT PGTRVKMAME TEDSSRITWF QGIVTSTFQG SPWKQLQVTW  360
DEPEILQNLK RVNPWQVEIV SNSTQLHHAT YPQAKRLKFP QGVSGFLSGE GGGGGGEMVY  420
SGRGLPIAAQ AVDPSPYMFS YTTFPAGMQG ARHYEFGSFN STGFIGEDTP QLCTNNFFSP  480
LPGLGKVSTE MMNFGSPPSD DLSPNSNTTN LSSGNELVGN RGTTSARASS FQLFGKIINV  540
QELYENGLAE SGLYEEEGSK ESSDNEVPNE TQLSLTQGRH HGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-631438551395Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676715028
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390047.10.0auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLV4KJ900.0V4KJ90_EUTSA; Auxin response factor
STRINGXP_006390047.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]