PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676715008
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MIKC_MADS
Protein Properties Length: 200aa    MW: 23534.2 Da    PI: 6.1541
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676715008genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.38.2e-23958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krie  +nrq+t+skR++g++KKA+ELS+LCd++ a+++fs++++l  +s
  676715008  9 KRIEKITNRQITYSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFS 58
               79*****************************************9997765 PP
2K-box21.41e-081141861183
      K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                +++ e+l+qe+ +L+++++  ++e+R +  + L   s++e+++ e++L + l ++ ++K++ll +  e    k
  676715008 114 HSDVEELEQEVCRLQQQLRISESELRIFEPDPLRFTSMEEMEHCETHLLNTLARVVQRKEHLLSRPCEAPSTK 186
                567899*********************************************************9877765555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.142161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-27286IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-22323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-211055IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGRGKLELKR IEKITNRQIT YSKRKKGLIK KAYELSTLCD IDLALLMFSP SDRLCLFSGQ  60
TRIQDVFARY INLPDQEREK GIQNKEYLLR TLEQLETENS MALQINELRP ECIHSDVEEL  120
EQEVCRLQQQ LRISESELRI FEPDPLRFTS MEEMEHCETH LLNTLARVVQ RKEHLLSRPC  180
EAPSTKQSME KILLKDVVEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-14178179MEF2C
5f28_B2e-14178179MEF2C
5f28_C2e-14178179MEF2C
5f28_D2e-14178179MEF2C
6byy_A2e-14170169MEF2 CHIMERA
6byy_B2e-14170169MEF2 CHIMERA
6byy_C2e-14170169MEF2 CHIMERA
6byy_D2e-14170169MEF2 CHIMERA
6bz1_A2e-14170169MEF2 CHIMERA
6bz1_B2e-14170169MEF2 CHIMERA
6bz1_C2e-14170169MEF2 CHIMERA
6bz1_D2e-14170169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676715008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894145e-59AC189414.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061K11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889727.11e-112agamous-like MADS-box protein AGL66
RefseqXP_022544991.11e-113agamous-like MADS-box protein AGL104 isoform X3
SwissprotQ1PFC25e-82AGL66_ARATH; Agamous-like MADS-box protein AGL66
SwissprotQ9LM465e-82AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLD7KV591e-111D7KV59_ARALL; Transcription factor
TrEMBLD7KXQ31e-111D7KXQ3_ARALL; Transcription factor
STRINGfgenesh2_kg.2__2089__AT1G77950.11e-112(Arabidopsis lyrata)
STRINGfgenesh2_kg.2__2429__AT1G77950.21e-112(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.21e-112AGAMOUS-like 67
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]