PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676715002
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MIKC_MADS
Protein Properties Length: 290aa    MW: 33163.9 Da    PI: 4.6916
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676715002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.72.3e-26958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++nrqvtfskRrng++KKA+ELS+LCd+++a+++fs++++l  +s
  676715002  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFS 58
               79******************************************998776 PP
2K-box17.71.5e-07831501279
      K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                +  e+l+qe+ kL++++++ ++e+R++  +     +++e +  e+qL + l+++ ++++++l +q++ 
  676715002  83 QSKEELEQEVYKLQQQLHMAEEELRKYEPDPTRFTTMEEYETCEKQLIETLTRVTQRREHILSDQLSS 150
                55689************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.805161IPR002100Transcription factor, MADS-box
CDDcd002654.68E-34275No hitNo description
SuperFamilySSF554553.79E-29290IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-24323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK  60
TRVEDVFTRF INLPDQEREK DFQSKEELEQ EVYKLQQQLH MAEEELRKYE PDPTRFTTME  120
EYETCEKQLI ETLTRVTQRR EHILSDQLSS YEASAIQPIP HQNMGGPFVN DVAGGWLAEN  180
GPNQAQLFDA SAHSAMYETL LQGSSSSSNQ NNMSECHVSN HNGDMFQEWA QAYTSTTGLN  240
PSALFPPMQH QHGVVGPNME ESEIPVITRE AQADHEVSDY DIRMPQLSSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-16154154MEF2 CHIMERA
6byy_B4e-16154154MEF2 CHIMERA
6byy_C4e-16154154MEF2 CHIMERA
6byy_D4e-16154154MEF2 CHIMERA
6bz1_A4e-16154154MEF2 CHIMERA
6bz1_B4e-16154154MEF2 CHIMERA
6bz1_C4e-16154154MEF2 CHIMERA
6bz1_D4e-16154154MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676715002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0941111e-166AB094111.1 Arabidopsis thaliana At1g77980 mRNA for MADS-box protein, partial cds.
GenBankAY1412421e-166AY141242.1 Arabidopsis thaliana MADS-box protein AGL66 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455254.10.0PREDICTED: agamous-like MADS-box protein AGL66
SwissprotQ1PFC21e-172AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLV4KJ821e-180V4KJ82_EUTSA; Uncharacterized protein
STRINGXP_006390037.11e-180(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-169AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]