PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676714772 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 26018.5 Da PI: 6.5402 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.4e-12 | 74 | 120 | 4 | 53 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++ rE++RRdr+N++f eL ++l + +++K +K++i A++ +++ 676714772 74 SKACREKQRRDRLNDKFTELSTILEPG---RAPKTDKVAIISDAIRMVNQ 120 5678**********************9...9**************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.385 | 70 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.41E-8 | 73 | 126 | No hit | No description |
Pfam | PF00010 | 1.9E-9 | 74 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-12 | 74 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-12 | 75 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-8 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MVSPENTNWL SDYPLIDGGA FSDHNPTFPW QIDQIDGSAS VSVEVDGFLC DSDVIKEPGS 60 RKRIKSESCG GSSSKACREK QRRDRLNDKF TELSTILEPG RAPKTDKVAI ISDAIRMVNQ 120 VRDEAQKLKD LNSSLQEKIK ELKDEKSELR DEKQKLKIEK ERIEQQLKAI KTQPLPQPCF 180 LPNQPTLSQA QAQAPGNKLV PFTTYPGFAM WQFMPPAAVD TSQDHVLRPP VA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676714772 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353406 | 0.0 | AK353406.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-I24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006393084.1 | 1e-153 | transcription factor bHLH115 | ||||
Swissprot | Q9C682 | 1e-148 | BH115_ARATH; Transcription factor bHLH115 | ||||
TrEMBL | E4MY09 | 1e-152 | E4MY09_EUTHA; mRNA, clone: RTFL01-30-I24 | ||||
TrEMBL | V4JXZ4 | 1e-152 | V4JXZ4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006393084.1 | 1e-153 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1437 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 1e-151 | bHLH family protein |
Publications ? help Back to Top | |||
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