PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676714282
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ARF
Protein Properties Length: 692aa    MW: 78450.5 Da    PI: 6.3904
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676714282genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.2e-24166267199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+
  676714282 166 FSKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGENGELR 261
                88****************************9643..445569************************************************..449999** PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+v+r+
  676714282 262 VGVRRA 267
                ****97 PP
2Auxin_resp107.81.2e-35292376183
  Auxin_resp   1 aahaastksvFevvYnPras...tseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a ha++t+s+F+v+Y+P+ +   ts+F+++++k+++a+++k+svGmRfkm+fe+eds+err+sGtvvgv+d++  +W++S+Wr+L+
   676714282 292 ACHATQTRSMFTVYYKPSLGlsrTSQFIISLNKYLEAMNNKFSVGMRFKMRFEGEDSPERRFSGTVVGVKDCSD-HWKDSQWRCLE 376
                 6899*************96433389**********************************************888.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-42157281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-38159295IPR015300DNA-binding pseudobarrel domain
CDDcd100176.83E-21164266No hitNo description
PfamPF023624.1E-22166267IPR003340B3 DNA binding domain
SMARTSM010194.6E-24166268IPR003340B3 DNA binding domain
PROSITE profilePS5086312.731166268IPR003340B3 DNA binding domain
PfamPF065077.8E-32292375IPR010525Auxin response factor
PfamPF023096.5E-12554664IPR033389AUX/IAA domain
SuperFamilySSF542771.44E-12571652No hitNo description
PROSITE profilePS5174526.829576676IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MTAVELLLID FRYRNGTVTR LHAPYEPLKA NTFMTYPVET ERNGDKSIEG EHLYDELWKL  60
CAGPLVDVPQ AEERVYYFPQ GHMEQLEAST QQDLNTMKPT KPLFDLPPKI LCRVMNVRLQ  120
AEKDTDDVYA QITLMPEGTK VHQVDEPTTP DAPPHPESQR PKVHSFSKVL TASDTSTHGG  180
FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT  240
SKRLVAGDTF VFLRGENGEL RVGVRRANRQ QSNMPSSVIS SHSMHLGVLA TACHATQTRS  300
MFTVYYKPSL GLSRTSQFII SLNKYLEAMN NKFSVGMRFK MRFEGEDSPE RRFSGTVVGV  360
KDCSDHWKDS QWRCLEVHWD EPASIPRPDK VSPWEIEPFL TSENVPQSVV VKNKRPRHAS  420
EVSTLGITTT NLWSSAFTQS HEFAQSCITS QRNSSQHCYR DATEDAKTND WPISPYSVSN  480
ASKDSTLNDQ MVFPVEQKKP ETTTTCRLFG IDLMSSSVPS SEEKATPMRA INIAKPTVDS  540
NTDPKSEISK LSEEKKDEPA QASPKEVQSK QISSTRSRTK VQMQGVPVGR AVDLTVLNGY  600
SELIDDLEKL FDIEGELRSR NQWEIVFTDD EGDMMLVGDD PWPEFCNMVK RIFIWSKEEV  660
KKMTPGNQLR ILLTEVDTTL TTTISKTENL SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1625339919355Auxin response factor 1
4ldw_A1e-1625339919355Auxin response factor 1
4ldw_B1e-1625339919355Auxin response factor 1
4ldx_A1e-1625339919355Auxin response factor 1
4ldx_B1e-1625339919355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676714282
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482581.10.0PREDICTED: auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A397KZI00.0A0A397KZI0_BRACM; Auxin response factor
STRINGXP_006413489.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9