PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676713830

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 808aa MW: 91693.9 Da PI: 4.5067

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676713830	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	56.9	6.9e-18	19	131	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.kgelvgl 102 ++F td lv +yL+k+v + k +i+++++y+ ePw Lp++ ++ +++++ + + r + g+W atg +ke++++ k+e++g 676713830 19 LKFYATDVSLVGYYLRKRVGTGKD---GFITDINLYQDEPWLLPHA------------TSTREQTNRSVPGRgGSNGGTWTATGVKKEIIDSnKKEVIGY 103 79****************9994...45***********32............3445556677788877889*********9867778* PP NAM 103 kktLvfykg..rapkgektdWvmheyrl 128 ++ L+++k+ +pkg+ t Wvm ey l 676713830 104 RTELAYHKNakGKPKGVTTGWVMTEYWL 131 *****65337899*********87 PP
2	NAM	56.9	6.9e-18	422	534	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.kgelvgl 102 ++F td lv +yL+k+v + k +i+++++y+ ePw Lp++ ++ +++++ + + r + g+W atg +ke++++ k+e++g 676713830 422 LKFYATDVSLVGYYLRKRVGTGKD---GFITDINLYQDEPWLLPHA------------TSTREQTNRSVPGRgGSNGGTWTATGVKKEIIDSnKKEVIGY 506 79****************9994...45***********32............3445556677788877889*********9867778* PP NAM 103 kktLvfykg..rapkgektdWvmheyrl 128 ++ L+++k+ +pkg+ t Wvm ey l 676713830 507 RTELAYHKNakGKPKGVTTGWVMTEYWL 534 *****65337899*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	24.638	15	160	IPR003441	NAC domain
SuperFamily	SSF101941	4.32E-21	16	143	IPR003441	NAC domain
Pfam	PF02365	4.7E-11	18	130	IPR003441	NAC domain
PROSITE profile	PS51005	24.638	418	563	IPR003441	NAC domain
SuperFamily	SSF101941	4.18E-21	419	546	IPR003441	NAC domain
Pfam	PF02365	4.7E-11	421	533	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 808 aa Download sequence Send to blast
MERLQIGSER FTMANPSDLK FYATDVSLVG YYLRKRVGTG KDGFITDINL YQDEPWLLPH 60 ATSTREQTNR SVPGRGGSNG GTWTATGVKK EIIDSNKKEV IGYRTELAYH KNAKGKPKGV 120 TTGWVMTEYW LASEKEVVLC YLRDKSKNDN NIVVDQLPES KNGDKNIVFK QPERENTEDN 180 NNMISNALVS GVERWELDSE FGQNKMEYFD KATQEQQYRQ ISLPQRQVSG RTSKQLVIMD 240 HECVNQDKIS DQADQEAGIY QPAQQQGIND MCDPNDMFDM DELHDFTHQQ QPLIPTPQDM 300 MVPPLQGQDS RFSVQDMNPT CGAEGLGLQN MMGNSDTSTQ EQQFPQIYLP PQRQDYGSGH 360 NPLVIMEDEC VDQEEIFNLV DQESGITQPK QQQKMTVGDG GFIMERLQIG SERFTMANPS 420 DLKFYATDVS LVGYYLRKRV GTGKDGFITD INLYQDEPWL LPHATSTREQ TNRSVPGRGG 480 SNGGTWTATG VKKEIIDSNK KEVIGYRTEL AYHKNAKGKP KGVTTGWVMT EYWLASEKEV 540 VLCYLRDKSK NDNNIVVDQL PESKNGDKNI VFKQPERENT EDNNNMISNA LVSGVERWEL 600 DSEFGQNKME YFDKATQEQQ YRQISLPQRQ VSGRTSKQLV IMDHECVNQD KISDQADQEA 660 GIYQPAQQQG INDMCDPNDM FDMDELHDFT HQQQPLIPTP QDMMVPPLQG QDSRFSVQDM 720 NPTCGAEGLG LQNMMGNSDT STQEQQFPQI YLPPQRQDYG SGHNPLVIME DECVDQEEIF 780 NLVDQESGIT QPKQQQKMTV GDGVCHKR

Sequence ? help Back to Top

Protein Sequence Length: 808 aa Download sequence Send to blast

MERLQIGSER FTMANPSDLK FYATDVSLVG YYLRKRVGTG KDGFITDINL YQDEPWLLPH  60
ATSTREQTNR SVPGRGGSNG GTWTATGVKK EIIDSNKKEV IGYRTELAYH KNAKGKPKGV  120
TTGWVMTEYW LASEKEVVLC YLRDKSKNDN NIVVDQLPES KNGDKNIVFK QPERENTEDN  180
NNMISNALVS GVERWELDSE FGQNKMEYFD KATQEQQYRQ ISLPQRQVSG RTSKQLVIMD  240
HECVNQDKIS DQADQEAGIY QPAQQQGIND MCDPNDMFDM DELHDFTHQQ QPLIPTPQDM  300
MVPPLQGQDS RFSVQDMNPT CGAEGLGLQN MMGNSDTSTQ EQQFPQIYLP PQRQDYGSGH  360
NPLVIMEDEC VDQEEIFNLV DQESGITQPK QQQKMTVGDG GFIMERLQIG SERFTMANPS  420
DLKFYATDVS LVGYYLRKRV GTGKDGFITD INLYQDEPWL LPHATSTREQ TNRSVPGRGG  480
SNGGTWTATG VKKEIIDSNK KEVIGYRTEL AYHKNAKGKP KGVTTGWVMT EYWLASEKEV  540
VLCYLRDKSK NDNNIVVDQL PESKNGDKNI VFKQPERENT EDNNNMISNA LVSGVERWEL  600
DSEFGQNKME YFDKATQEQQ YRQISLPQRQ VSGRTSKQLV IMDHECVNQD KISDQADQEA  660
GIYQPAQQQG INDMCDPNDM FDMDELHDFT HQQQPLIPTP QDMMVPPLQG QDSRFSVQDM  720
NPTCGAEGLG LQNMMGNSDT STQEQQFPQI YLPPQRQDYG SGHNPLVIME DECVDQEEIF  780
NLVDQESGIT QPKQQQKMTV GDGVCHKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676713830

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144711.1	5e-82	PREDICTED: NAC domain-containing protein 6-like
TrEMBL	A0A3P5ZDB6	1e-80	A0A3P5ZDB6_BRACM; Uncharacterized protein
STRING	XP_006404273.1	2e-58	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	4e-14	NAC domain containing protein 47