PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676713814
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 408aa    MW: 46326.6 Da    PI: 4.5696
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676713814genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.42.4e-18221345128
        NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.kgelvgl 102
                ++F  td  lv +yL+k+v + k     +i+++++y+ ePw Lp++            ++ +++++ + + r   + g+W atg +ke++++ k+e++g 
  676713814  22 LKFYATDVSLVGYYLRKRVGTGKD---GFITDINLYQDEPWLLPHA------------TSTREQTNRSVPGRgGSNGGTWTATGVKKEIIDSnKKEVIGY 106
                79******************9994...45***************32............3445556677788877889*************9867778*** PP

        NAM 103 kktLvfykg..rapkgektdWvmheyrl 128
                ++ L+++k+   +pkg+ t Wvm ey l
  676713814 107 RTELAYHKNakGKPKGVTTGWVMTEYWL 134
                *******65337899***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.63818163IPR003441NAC domain
SuperFamilySSF1019411.19E-2119146IPR003441NAC domain
PfamPF023651.5E-1121133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
GFIMERLQIG SERFTMANPS DLKFYATDVS LVGYYLRKRV GTGKDGFITD INLYQDEPWL  60
LPHATSTREQ TNRSVPGRGG SNGGTWTATG VKKEIIDSNK KEVIGYRTEL AYHKNAKGKP  120
KGVTTGWVMT EYWLASEKEV VLCYLRDKSK NDNNIVVDQL PESKNGDKNI VFKQPERENT  180
EDNNNMISNA LVSGVERWEL DSEFGQNKME YFDKATQEQQ YRQISLPQRQ VSGRTSKQLV  240
IMDHECVNQD KISDQADQEA GIYQPAQQQG INDMCDPNDM FDMDELHDFT HQQQPLIPTP  300
QDMMVPPLQG QDSRFSVQDM NPTCGAEGLG LQNMMGNSDT STQEQQFPQI YLPPQRQDYG  360
SGHNPLVIME DECVDQEEIF NLVDQESGIT QPKQQQKMTV GDGVCHKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676713814
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144711.11e-86PREDICTED: NAC domain-containing protein 6-like
TrEMBLA0A3P5ZDB63e-85A0A3P5ZDB6_BRACM; Uncharacterized protein
STRINGXP_006404273.19e-62(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-14NAC domain containing protein 47