PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676713656

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

CPP

Protein Properties

Length: 696aa MW: 76605.9 Da PI: 5.3698

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676713656	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	25.8	2.1e-08	407	431	16	40
TCR 16 kYCeCfaagkkCseeCkCedCkNke 40 YCeCfaag++C e C+C dC+Nk 676713656 407 SYCECFAAGVYCIEPCSCIDCFNKP 431 6**********************96 PP
2	TCR	52.7	8.2e-17	478	516	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeCf+ g+ Cs +C+Ce+CkN 676713656 478 RHKRGCNCKKSGCLKKYCECFQGGVGCSINCRCEGCKNA 516 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	31.98	391	518	IPR005172	CRC domain
SMART	SM01114	5.1E-4	405	433	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	4.9E-5	407	430	IPR005172	CRC domain
SMART	SM01114	4.3E-18	478	519	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.5E-12	480	516	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence Send to blast
MDTPQKSITQ IGTPISKSRF EDSPVFNYIN SLSPIRPVKS IQNPHQFSTL NFTSPPSVFT 60 SPHLTSSHKE SRFFKTHNSS SSSDPTIPVE DSLDESPTNE EVAEEAEPTK DFNIDASMGK 120 EASTEMEQPQ IIKHVGSGMT PDDPVAASPC GNDTTDLSLV PLGSPPGGEN GSFQDSPGME 180 MQNMHDNVQG KTETPDWESL IADASELLIF GSPNDSEAFR CLMMQRASTS QAPAGMPTMQ 240 SDSKIEPESS NVVPYEAVSV LHRGIRRRCL DFEMPGNKQT SRENNTSACE SSSRCVVPSI 300 GLHLNAILMS SKDCKTNVTH DYTCSEKNQV CLQGSSSTLQ ETLELTEHET REGADQDVPV 360 EPTMEELHLN SPKKKRQDSC LSWKLEKASH ALQKCVMFLS LLMFMCSYCE CFAAGVYCIE 420 PCSCIDCFNK PIHEDTVLAT RKQIESRNPL AFAPKVIRSS DSVQETGDDA SKTPASARHK 480 RGCNCKKSGC LKKYCECFQG GVGCSINCRC EGCKNAFGRK DGSCIVEMEA EQEEEKESSE 540 KNRKAKTQEN TEIYLMRKEE SSALPTTPMS IYRQQMLQVP FSSSKNMMPP PQSLLRGGSS 600 SGVYNSQYLR KPEINLTQSR TEKSFETVTE DRAEEMPEIL SHSPIDNIKA VSPNGKRVSP 660 PHLDSSSSGS ILGRRSGGRK LILQSIPLFP SLTPQQ

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence Send to blast

MDTPQKSITQ IGTPISKSRF EDSPVFNYIN SLSPIRPVKS IQNPHQFSTL NFTSPPSVFT  60
SPHLTSSHKE SRFFKTHNSS SSSDPTIPVE DSLDESPTNE EVAEEAEPTK DFNIDASMGK  120
EASTEMEQPQ IIKHVGSGMT PDDPVAASPC GNDTTDLSLV PLGSPPGGEN GSFQDSPGME  180
MQNMHDNVQG KTETPDWESL IADASELLIF GSPNDSEAFR CLMMQRASTS QAPAGMPTMQ  240
SDSKIEPESS NVVPYEAVSV LHRGIRRRCL DFEMPGNKQT SRENNTSACE SSSRCVVPSI  300
GLHLNAILMS SKDCKTNVTH DYTCSEKNQV CLQGSSSTLQ ETLELTEHET REGADQDVPV  360
EPTMEELHLN SPKKKRQDSC LSWKLEKASH ALQKCVMFLS LLMFMCSYCE CFAAGVYCIE  420
PCSCIDCFNK PIHEDTVLAT RKQIESRNPL AFAPKVIRSS DSVQETGDDA SKTPASARHK  480
RGCNCKKSGC LKKYCECFQG GVGCSINCRC EGCKNAFGRK DGSCIVEMEA EQEEEKESSE  540
KNRKAKTQEN TEIYLMRKEE SSALPTTPMS IYRQQMLQVP FSSSKNMMPP PQSLLRGGSS  600
SGVYNSQYLR KPEINLTQSR TEKSFETVTE DRAEEMPEIL SHSPIDNIKA VSPNGKRVSP  660
PHLDSSSSGS ILGRRSGGRK LILQSIPLFP SLTPQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	6e-12	433	515	49	120	Protein lin-54 homolog
5fd3_B	6e-12	433	515	49	120	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00433	DAP	Transfer from AT4G14770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676713656

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161539	1e-107	AL161539.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39.
GenBank	CP002687	1e-107	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z97337	1e-107	Z97337.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006282514.1	0.0	protein tesmin/TSO1-like CXC 2
Swissprot	F4JIF5	0.0	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	R0F1B1	0.0	R0F1B1_9BRAS; Uncharacterized protein
STRING	XP_006282514.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	0.0	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]