PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676713260
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Dof
Protein Properties Length: 232aa    MW: 26121.8 Da    PI: 6.9922
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676713260genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.11.6e-372177561
     zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
               a+ cprC+s+ntkfCyynnys+sqPryfCk+CrryWt+GG lrn+PvGg++rk+k+ 
  676713260 21 ARVCPRCHSENTKFCYYNNYSVSQPRYFCKNCRRYWTHGGNLRNIPVGGSCRKSKRP 77
               578***************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-241676IPR003851Zinc finger, Dof-type
PfamPF027011.6E-322276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6772276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDSSSAFVQG DNQVNEEKPL ARVCPRCHSE NTKFCYYNNY SVSQPRYFCK NCRRYWTHGG  60
NLRNIPVGGS CRKSKRPKMD QPSVSQVVSA EMEQMNHHQP FLHVQETNEF FGSFGGSSSS  120
AIVVGNHFGS LPEIHGDMVT NVPPAGSFPP MEALDISDVL FRKDYYDVGY NDLIGNSLIN  180
QSIGGSDVVS YDHNSYRANQ EDQNMWNQSF NNSMNMNHSA STSGSRGYIF RR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676713260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728783e-61AC172878.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence.
GenBankAC2410203e-61AC241020.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413831.11e-112dof zinc finger protein DOF4.4
SwissprotQ9SUA91e-74DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLV4MFK81e-111V4MFK8_EUTSA; Uncharacterized protein
STRINGXP_006413831.11e-112(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.16e-72Dof-type zinc finger domain-containing protein