PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676713258 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | Dof | ||||||||
Protein Properties | Length: 242aa MW: 27109 Da PI: 8.9635 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 114.2 | 5.7e-36 | 21 | 77 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + cprCds+ntkfCyynnys++qPry Ck+CrryWt+GGalrn+P+Gg+ rk k++ 676713258 21 PRVCPRCDSDNTKFCYYNNYSMAQPRYNCKNCRRYWTHGGALRNIPIGGSGRKTKRA 77 678**************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-24 | 16 | 76 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-31 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.773 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MASSNVYVRG NRQVNEEKPP PRVCPRCDSD NTKFCYYNNY SMAQPRYNCK NCRRYWTHGG 60 ALRNIPIGGS GRKTKRARVE QPSVSQVVSV EIQQVNHRQP LVHVQETNEF FGSFGGSSSA 120 VAVGNHFGSL PDIHGDMVLP IRSIPPMDRL DLSDGSFHQG YYNVGSSDLV ANPLINQSIG 180 EHVNNYNSYR VNQEDPNNRN QSFNNTMNMN HNASTSGSRG YPGTDHMIDN NNNNKVKNKC 240 VL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676713258 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC172878 | 5e-66 | AC172878.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence. | |||
GenBank | AC241020 | 5e-66 | AC241020.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013647345.1 | 1e-135 | dof zinc finger protein DOF4.4-like | ||||
Swissprot | Q9SUA9 | 2e-79 | DOF44_ARATH; Dof zinc finger protein DOF4.4 | ||||
TrEMBL | A0A398AKU6 | 1e-132 | A0A398AKU6_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DAI3 | 1e-132 | M4DAI3_BRARP; Uncharacterized protein | ||||
STRING | Bra013493.1-P | 1e-133 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1602 | 17 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21050.1 | 2e-65 | Dof-type zinc finger domain-containing protein |