PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676712676

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Nin-like

Protein Properties

Length: 866aa MW: 96284.4 Da PI: 6.0601

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676712676	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.6e-29	559	609	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ 676712676 559 DKTITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 609 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.2	543	629	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-25	561	609	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.66E-23	739	835	No hit	No description
PROSITE profile	PS51745	28.239	747	830	IPR000270	PB1 domain
SMART	SM00666	2.2E-26	747	830	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	8.8E-21	748	827	No hit	No description
CDD	cd06407	8.80E-44	748	828	No hit	No description
Pfam	PF00564	3.5E-19	749	829	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence Send to blast
MEGSFLQTEN AVMDAEFMDG LLLDGCWLET TDGSEFLNLT PSTSSVAPFD PSSFMWSPTQ 60 DTSAICTPGV GTQVYSQDCA ERSSSLDEFQ WNKRWWIGPG GGGSSVTEKL VQAVEHIKDY 120 TTERGSLIQL WVPVNRGGKR VLTTKEQPFS HDPMCQRLAN YREISVNYHF SAEQDDSKAL 180 AGLPGRVFLG KLPEWTPDVR FFRSEEYPRV QHAQDCDVRG TLAIPVFEQG SKICLGVIEV 240 VMTTEMVKLR PQLESICRAL QAVDLRSTEL PIPSSLKGCD LSYKAALPEI RNLLRCACET 300 HKLPLAQTWV SCLQQTKSGC RHNDENYIHC VSTIDDACYV GDPTVREFHE ACSEHHLLKG 360 QGVAGQAFLT NGPCFSPDVS NYKKAEYPLS HHANMYGLHG AVAIRLRCIH TGSADFVLEF 420 FLPKDCDDLE EQRRMLNALS TIMAHVPRTL RTVTDKELEE ESEVIEREEI VTPKIENTSE 480 VHHPHGSSSW SGSLEEIQRS NISNPQNLGS VFDGGDKPND GFGLKRCFDY TRDSNVNESS 540 TFSTDGFSRM TEKKRTKADK TITLDVLRQY FAGSLKDAAK SIGVCPTTLK RICRQHGIQR 600 WPSRKIKKVG HSLQKIQRVI DSVEGVSGPL PIGSFYANFP NLASQSQEPS QQAKTSPPPP 660 PLQPSKSPVS PYSNSSSSSQ CCSSETQLNS GATTHPSQAD VGGALKKASS EIDLQSSSLD 720 ETVLTLSSLE NIPQGTNLLS SSQDDDLLRI KVSYGEEKIR FRMRNSRRLA DLLWEIGKRF 780 SIEDMSRYDL KYLDEDNEWV LLTCDEDVEE CVDVCRTTPS HTIKLLLHVS SHHFPERSSA 840 TGLLGSALGF VLKKAPERKH VKILSS

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence Send to blast

MEGSFLQTEN AVMDAEFMDG LLLDGCWLET TDGSEFLNLT PSTSSVAPFD PSSFMWSPTQ  60
DTSAICTPGV GTQVYSQDCA ERSSSLDEFQ WNKRWWIGPG GGGSSVTEKL VQAVEHIKDY  120
TTERGSLIQL WVPVNRGGKR VLTTKEQPFS HDPMCQRLAN YREISVNYHF SAEQDDSKAL  180
AGLPGRVFLG KLPEWTPDVR FFRSEEYPRV QHAQDCDVRG TLAIPVFEQG SKICLGVIEV  240
VMTTEMVKLR PQLESICRAL QAVDLRSTEL PIPSSLKGCD LSYKAALPEI RNLLRCACET  300
HKLPLAQTWV SCLQQTKSGC RHNDENYIHC VSTIDDACYV GDPTVREFHE ACSEHHLLKG  360
QGVAGQAFLT NGPCFSPDVS NYKKAEYPLS HHANMYGLHG AVAIRLRCIH TGSADFVLEF  420
FLPKDCDDLE EQRRMLNALS TIMAHVPRTL RTVTDKELEE ESEVIEREEI VTPKIENTSE  480
VHHPHGSSSW SGSLEEIQRS NISNPQNLGS VFDGGDKPND GFGLKRCFDY TRDSNVNESS  540
TFSTDGFSRM TEKKRTKADK TITLDVLRQY FAGSLKDAAK SIGVCPTTLK RICRQHGIQR  600
WPSRKIKKVG HSLQKIQRVI DSVEGVSGPL PIGSFYANFP NLASQSQEPS QQAKTSPPPP  660
PLQPSKSPVS PYSNSSSSSQ CCSSETQLNS GATTHPSQAD VGGALKKASS EIDLQSSSLD  720
ETVLTLSSLE NIPQGTNLLS SSQDDDLLRI KVSYGEEKIR FRMRNSRRLA DLLWEIGKRF  780
SIEDMSRYDL KYLDEDNEWV LLTCDEDVEE CVDVCRTTPS HTIKLLLHVS SHHFPERSSA  840
TGLLGSALGF VLKKAPERKH VKILSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676712676

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY091015	0.0	AY091015.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
GenBank	AY117237	0.0	AY117237.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006306759.1	0.0	protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	R0GUM3	0.0	R0GUM3_9BRAS; Uncharacterized protein
STRING	XP_006306759.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein