PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676711936
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 320aa    MW: 36761.5 Da    PI: 8.7703
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676711936genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.5e-31113169258
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                dDgy+WrKYGqK++k+s++prsYY+Ct + C++kk+vers+++p++ +itYeg H h
  676711936 113 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPICNAKKQVERSTDEPNAYIITYEGFHLH 169
                8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-28106169IPR003657WRKY domain
PROSITE profilePS5081126.59107169IPR003657WRKY domain
SuperFamilySSF1182902.62E-25111169IPR003657WRKY domain
SMARTSM007744.4E-36112171IPR003657WRKY domain
PfamPF031063.3E-25113169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAEEELSEWT RRYEINAVDE LFVNEPPLFF LPQEHDRRLM PNEDYITKKV VSSKLDSSPR  60
IQDIADALAM VEPLTHPVQQ IPKSTVPILG KITWSKVDRY TIKVKNNCKR MSDDGYKWRK  120
YGQKSIKNSP NPRSYYKCTN PICNAKKQVE RSTDEPNAYI ITYEGFHLHF TYPFFLPNSM  180
HSPNKRPKKV KHDARYKTLE INKNSQIQEE NKQAELVEPT YQNHPAHENL KDELFFPFDR  240
CGGRQGLLED VVAPVMKNIL TNDGVSVASW SSLSSYTSSS GSSSKTNSPP LSPSSLSWTT  300
NFNIKFSDDD ILNSIGSRKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-191131691874Probable WRKY transcription factor 4
2lex_A1e-191131691874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676711936
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114005.21e-134PREDICTED: probable WRKY transcription factor 49
SwissprotQ9FHR71e-121WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLA0A397XUN31e-133A0A397XUN3_BRACM; Uncharacterized protein
STRINGBra027480.1-P1e-133(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-122WRKY DNA-binding protein 49