PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676711036 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HB-other | ||||||||
Protein Properties | Length: 1786aa MW: 200432 Da PI: 5.1388 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.2e-18 | 104 | 160 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t+ qle+Le+ + ++yps++ r++L+ kl+L++rq ++WF+ rR k++k 676711036 104 KSKRKMKTAAQLEVLENTYSVEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKDRK 160 679****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 84 | 160 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.28E-15 | 98 | 161 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.342 | 101 | 161 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-16 | 103 | 165 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-15 | 104 | 160 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.54E-13 | 104 | 162 | No hit | No description |
SMART | SM00571 | 3.7E-22 | 615 | 674 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 15.96 | 615 | 674 | IPR018501 | DDT domain |
Pfam | PF02791 | 5.7E-16 | 616 | 671 | IPR018501 | DDT domain |
Pfam | PF05066 | 1.9E-15 | 797 | 864 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 5.3E-7 | 999 | 1037 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 1.1E-12 | 1166 | 1238 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1786 aa Download sequence Send to blast |
MSDRAAFQQV EKYITVCAND VTMTIETELL LGTIDAPLSL LHTHPSSFPE LTQKKTHRHH 60 HHFSQSLSPT SLIFYLELII ITKEMEGGSE AEKNKTPEGG SESKSKRKMK TAAQLEVLEN 120 TYSVEPYPSE AIRADLSVKL NLSDRQLQMW FCHRRLKDRK SSTPSKRQRK ESTPPVAESS 180 KQPAVNAADL LAGNELNSFA HELDSRRTVV RSGGGSAAGG GVTVVRRFNE PSHSEVRAIG 240 YVEAQLGERL RDDGPILGME FDPLPPGAFG TPIEMPSHRK APRPAFETNV YVRPDVKTVK 300 DSVRTIREYQ FLPEQPSSRT DHSERASPSH LYGVPLDASV LRASSVSGGY RDDYKISPQI 360 PNLNLSTHQG KAGHVSSPNL NEYDLPYQKS YVDPAAHGND DPFVKSEREV GNDDDEDEDD 420 LLLQLERKRK SEEARITREA EAHEKRIRKE LERQDMLRRK REEQIRKEME RQDRERRKEE 480 ERLLRERQRE EERYHKEQMR EMQRREKFLK KETIRAEKMR QKEEMRRVKE VARLKAANER 540 AMARKIAKES MELIEDERLE LMEVAALSQG LPSMVSLDFE TLQNLDAYRD KQVIFPPTSV 600 KLKKPFAMKP WNGSDENIAN LLMVWRFLIT FADVLGLWPF TLDEFTQSFH DYDPRLMGEI 660 HIVLLKTIIK DIEGVARTLS SGVGANQNAA ANPGGGHPHV VEGAYAWGFD IRSWRRNLNV 720 FTWPEILRQL ALSAGLGPQL KKQDIKTVSV HDDNEANNSE NVIFNLRIGA AAENAFAKMQ 780 ERGLSNPRRS RHRLTPGTVK FAAFHVLSIE GEKGLTILEV AEKIQKSGLR DLTTSRTPEA 840 SVAAALSRDT KLFERVAPST YCVRPSYRKD AADAETIFSE ARERIRMFKS GVTDVEDVDE 900 AERDEDSESD VGDDPEVDLN LKKEDPDAME VENLSDVKPV LENGKLDTVT MKTEPGLPRT 960 PSSLPESTKD EKIDDILPDQ SLEKTVANDE NSACFSKLGE QWVQGLVEGD YSNLSIEERL 1020 NALVALIGIA IEGNTIRIAL EERLEVASAL KKQMWSEVQL DKRWKEESLI RANYLSYPTP 1080 KIATPAFGNQ ESPSADVTPI SSQDPLSLSQ IDVNNAVAGP SLQLQENVSG MESLPYQQGY 1140 TADRERLRAQ LKAYVGYKAE ELYVYRSLPL GQDRRRNRYW RFSASASRND PGCGRIFVEL 1200 QDGRWRLIDS EEGFDYLVKS LDVRGVRESH LHFMLLKIEA SFKEAVRRNV ETNHELCSIS 1260 TGVDLDSDTA EISTTFKIEL GDSDGTERCG VMQRFQSFEK WMWDNMLHPG ALSAFKYGAK 1320 KSIPLFHICR SCAELHFVGD ICCPGCGQMM RGGLDGSELC FAEQVARLGE ISRGDPGFIL 1380 RGSNLSPLRI RLLKIQLALV EASLPPEGLQ ASWTEDLRKT WGLKLLSSSS PEELHQVLTM 1440 LEFALKRDFL SSNFETTSEL LGLPEDAVVS DLTSAVNVLP WIPKTTGGVA LRLFELDSSI 1500 VYTPDQNNDP QKDKESEEFV GVETSFLRNV QENDLVETTP VQVAYTQEEN WTESGLGGVS 1560 SSGRGRPPRG RGRPRSQRGK KPSLASGSAS ASGGRPPRGA ANSNGEPMLR PRTQPRGGRT 1620 NGRRSGTRSR TRPTKGTLGI SNEVVGVVGG RRAKEVNVNA KTSLRDNDEW VETPEMQDDE 1680 GEASSSGRSF QYDDVMAPVD DFDGVGESSK LVGRGEFSLH SDGEYEEEEE EEEDMDTKMG 1740 VNVDDEDYIN EDSDGREQPE ISIGAARKRF PFEDPDLTSS SSSDFQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676711036 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001318738.1 | 0.0 | Homeodomain-like transcriptional regulator | ||||
Refseq | NP_199231.1 | 0.0 | Homeodomain-like transcriptional regulator | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A178UEB6 | 0.0 | A0A178UEB6_ARATH; RLT2 | ||||
STRING | Bostr.3148s0041.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9601 | 25 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |