PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676710680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 229aa MW: 26150.6 Da PI: 4.7756 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.3 | 6.7e-14 | 56 | 99 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr+++P+ +K++Ka+i + A+ YI+ Lq 676710680 56 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIQGLQ 99 57*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.177 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-17 | 51 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.64E-13 | 52 | 99 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-17 | 55 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-14 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-11 | 56 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MNHIDQEFNN YWETNSFLQN EDFEYDSWPL EEAISGSYDS SSPDGAGSSP ASKNIVSERN 60 RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQY EETKLEAEIR ELESTPKSSL 120 SFSKDFDRDL LVPVTSKKMK QLDSGSSRSL IEVLELKVTF MGERTVVVNV TCNKRADTMV 180 KLCEVFESLN LKILTSNLNS FSGMIFNTVF IETTWTFLVD LKQDLIRVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-14 | 47 | 108 | 2 | 63 | Transcription factor MYC2 |
5gnj_B | 1e-14 | 47 | 108 | 2 | 63 | Transcription factor MYC2 |
5gnj_E | 1e-14 | 47 | 108 | 2 | 63 | Transcription factor MYC2 |
5gnj_F | 1e-14 | 47 | 108 | 2 | 63 | Transcription factor MYC2 |
5gnj_G | 1e-14 | 47 | 108 | 2 | 63 | Transcription factor MYC2 |
5gnj_I | 1e-14 | 47 | 108 | 2 | 63 | Transcription factor MYC2 |
5gnj_M | 1e-14 | 47 | 108 | 2 | 63 | Transcription factor MYC2 |
5gnj_N | 1e-14 | 47 | 108 | 2 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676710680 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY086666 | 0.0 | AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013712821.1 | 1e-148 | transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 1e-140 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A3P6EEA3 | 1e-146 | A0A3P6EEA3_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g130890.1 | 1e-146 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6367 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 1e-128 | bHLH family protein |