PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676710624 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 518aa MW: 58234.8 Da PI: 9.0349 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 7.2e-12 | 343 | 388 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f+ Lr+llP+ +K +Ka+iL+ A e + sLq 676710624 343 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASILTIAREQLISLQ 388 8899********************97.....8***********99887777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-15 | 332 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.735 | 338 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.77E-11 | 340 | 392 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-13 | 342 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-9 | 343 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-13 | 344 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MDAIFLTDDP NTRKQFIGSL AQSFGCVYVC LCYLTSLDGY YNEASQEPST STGSLVRRLF 60 HEYRQSVIPL RNGHVPSTAF MNNLPYLEIR AQDIQRFAYN DEQRLFYQAL IFMSCRSGEI 120 ELGLTYDASN MKIEASLREW FPEDFSRKSS PANSDYLRPP LLPSSSSSSH RSLDSPQNVS 180 EYSSLLFPLI PKPSTTTDAV NDPLHPLLPP VPSATTSNMI HQQQHESFFR NREREEEAMT 240 QAILAVLSAS SSPPSTSSSP LRKGRATAFK RYYCMISGGT GSGRAPPPSV RKQSMMKRAI 300 SFYNRLNIQR RERFAREMAT TGGGDGSGGS GGGRAPTATQ LHHMISERKR REKLNESFQA 360 LRSLLPPGTK KDKASILTIA REQLISLQGE ISKLVERNRE LEAKLAGERE MENDLQPDER 420 FNIRIRHIPE STSRQRVLDL GVVQRGKNIR VDDLMIRLLE FLKHINNVSL VSIDARTRAS 480 EDGDTSVVIV SLRLKVEGEW DESAFQEAVR RVVADLAH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 346 | 351 | ERKRRE |
2 | 347 | 352 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676710624 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619569.1 | 0.0 | PREDICTED: putative transcription factor bHLH041 | ||||
Refseq | XP_013673259.1 | 0.0 | putative transcription factor bHLH041 | ||||
Refseq | XP_022569086.1 | 0.0 | putative transcription factor bHLH041 | ||||
Swissprot | Q9LTS4 | 0.0 | BH041_ARATH; Putative transcription factor bHLH041 | ||||
TrEMBL | A0A078G7U1 | 0.0 | A0A078G7U1_BRANA; BnaA02g08430D protein | ||||
STRING | Bostr.26833s0565.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7060 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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