PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676710612
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 675aa    MW: 74137 Da    PI: 6.3899
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676710612genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.8e-06423443525
                --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                +C++f   G+C++Gd+C F+H
  676710612 423 PCNNFITKGFCHRGDSCLFSH 443
                7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.943389420IPR000571Zinc finger, CCCH-type
SMARTSM003560.42390419IPR000571Zinc finger, CCCH-type
SMARTSM003562.7421445IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6422446IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.789423446IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MRQKGWYRHR LRFFPDGLME SSVAPLHHRS SHLPKRTHLY LLHKLCSSLD RDNRVSLTTP  60
AVLQELVLGT GEFDYSIESL LLCLIRSQVS VGEVCTDEKL PKSSSIFEPR SDGGSGDSKV  120
ETISQEKSLM IGDVFDGIDL QDASVGNQHK DFFDEFELII NGSEDFEALD VNDHVDDGMA  180
KQGIDLVQSH TGIAIATELR VESVEGDNKV SEFIGSKAEE VFKLVESNEV LSCGVLEANN  240
EEMELERPVT SSQALTDSIL QMVVGDDDVE EGEISGDDND NMLAGDELQV ERHQESHVSQ  300
EVLDKRGEGT SKSTCSGVEV FSIEHGVKEN DQTFKNQEKM DSGTCIKKKS APSKEAKARK  360
KAKARKKRAQ ERISLGVKKL KLKTVAPKPK PIKYCRHYLK GRCYESCMKG DDCPYDHDLS  420
KYPCNNFITK GFCHRGDSCL FSHKGTPRSA SDTPSANVTT LSSNIAAASL STQKSNNQTV  480
REAIAKLPAI QARVSSSAAF LKPSNQNNSS DASSSKINEH ATPPQIPSLR KPSVAPKGMS  540
FLSLDKTSQE EDTVKLSLGS KQNTLNPDHQ SLKQSQQRSS VPLVPPKEIS FLSFASEEPE  600
SSINRKTTPN SHIQSSLNSA MKLAAEFESA KVKSRTNDIV EAVNKGEATV NMSVTRNSGN  660
ISSKILEFLS SFSTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346367KKKSAPSKEAKARKKAKARKKR
2358380RKKAKARKKRAQERISLGVKKLK
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676710612
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401265.10.0zinc finger CCCH domain-containing protein 65
SwissprotQ9LTS70.0C3H65_ARATH; Zinc finger CCCH domain-containing protein 65
TrEMBLV4LS750.0V4LS75_EUTSA; Uncharacterized protein
STRINGXP_006401265.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121601516