PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676710066 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 443aa MW: 50008.8 Da PI: 5.4235 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.5 | 3.3e-10 | 231 | 278 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ Er RR ++N+++e L+ l+P++ K + a+iL ++YI++L 676710066 231 KKKPFTTERDRRCHLNERYEALKLLIPSP-----SKGDRASILLDGIDYINEL 278 5566788*********************9.....79**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 7.4E-11 | 227 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.26E-12 | 228 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.554 | 229 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-8 | 231 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.3E-8 | 235 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.47E-10 | 238 | 283 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MYEENSCFDH NPRVESLINS NGGYCESTTA AEADFPVSHQ FQPPLMVTGS TTNSFNDDLK 60 LPPMEEFSVF PSVVSFPNSE TNYQISNDDN NNNSHMIQQM IHESNWVASV DNSGFFMNTS 120 NQNTTTTPIP DLLSLLHLPS CSMPLPNSNL SDIMSGSCFT YDPLFHLNLP PQPPLIHTAN 180 DYSGFLLGID NNTTTQTDEL NIGDENSNAQ FDSGIIEFSK KIRRKGRGKK KKKPFTTERD 240 RRCHLNERYE ALKLLIPSPS KGDRASILLD GIDYINELRR RVSELKYLVE RKRCGGRHKN 300 NNEVDNNNNN SDDHNNVDDE NIEKKPESDV IDQCSSNNSL RCSWLQRKSK VTEVDVRIVD 360 DEVTIKVVQK KKINCLLVVS KVLDQLHLDL HHVAGGQIGE HYSFLLNTKI NEGSTIYASA 420 IANRVIEVVD QHYMAALPIN INY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 219 | 233 | KKIRRKGRGKKKKKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676710066 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481763.1 | 0.0 | PREDICTED: transcription factor bHLH91-like | ||||
Swissprot | Q8GX46 | 0.0 | BH091_ARATH; Transcription factor bHLH91 | ||||
TrEMBL | V4LMD2 | 0.0 | V4LMD2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410252.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1355 | 26 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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