PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676710064
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 204aa    MW: 23242.8 Da    PI: 8.3643
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676710064genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.95e-058401754
               HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               N+++e Lr l+ ++      K++ a+iL+  ++YI++L
  676710064  8 NERYEALRMLIHNS-----SKVDRASILKDGINYINEL 40
               99*********997.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.68140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-6859IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-4840IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-4840No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MLDISEPNER YEALRMLIHN SSKVDRASIL KDGINYINEL CILINEFKNL AERKKCGVRH  60
KKNSKVDNKN SSYVTREIKH PLSKMKHCNN DDENMEKKPE SNVISNNSVR KSKVAGVHVM  120
IVDDEVTIKV VHTKKINCLL SVSKVLDQFL LELYYVDGRQ IGEDYSFLLK TKICEGSTIH  180
ANAVANKVIE VVDEQCMAPL LVNN
Cis-element ? help Back to Top
SourceLink
PlantRegMap676710064
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481763.15e-62PREDICTED: transcription factor bHLH91-like
SwissprotQ8GX461e-57BH091_ARATH; Transcription factor bHLH91
TrEMBLD7LD031e-57D7LD03_ARALL; Basic helix-loop-helix family protein
STRINGXP_010414166.13e-59(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.16e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]