PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676710046 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 732aa MW: 81029.5 Da PI: 6.356 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.3 | 0.00064 | 587 | 624 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq 676710046 587 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 624 67799************55......5566667777777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.4E-32 | 33 | 188 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 0.0011 | 568 | 625 | No hit | No description |
PROSITE profile | PS50888 | 11.28 | 574 | 623 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-4 | 587 | 642 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-5 | 587 | 630 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MGKRQISQDE VGPPINPRAG LRREQAGRGS YREILRSLCS NTEWKYAVFW KLHHRSRMVL 60 TLEDAYYDNQ GHNNSPEVQG CSVIPKNMHG GHDPLSLAVA KMAYHVYSLG EGIVGQVAVS 120 GEHQWVFPEY YDNSHSAFEF QNVWESQISA GIKTILVVAV GPYGVVQLGS LRKVDEDVTL 180 VNHIKHMFLA LKDPLADHAA NLMQCNMNNS LCLPKISSEC LHVEAFPNCA GEVDKAMDVE 240 ESNILTQYKS RRSDIMPYNN TPSSYLLMEK AAQVIGGREV VQGSTCRSYS GVTFGFPVDL 300 VDARHENQVG TNLISDIPHV EMTSGCKDPR ELDPNLHPYL KNHVVNNTSS SALAIEAERL 360 MTDQSYLGLD STFHTLSADN GSSYQGNKYH LKETERMAER KCESSRFDAL ISSGYPFAGS 420 ELLEALGSGF KQTSKGHEEL VKSEHGSTIR LTDDMSHSQL TFDSGRENLL DAVVANVCHG 480 DGNARDDILS SRSVQSLLTS MEMAEPSGQK KHIVGNSIDT AMNQLPLAEM DTQQNPSDIC 540 GAFSSIGFSS TCPSSSSDQF QTSLEMPKKN KKRAKPGESS RPRPRDRQLI QDRIKELREL 600 VPNGSKCSID SLLERTIKHM LFLQNVTKHA DKLSKSANTK MQQKETGTQG STCAVEVGGH 660 LQVCSIIVEN LNKQGMVLIE MLCEECSHFL EIANVIRSLD LIILRGITEA QGEKTWICFV 720 VEVGVEKYPL RG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may regulate root development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676710046 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352985 | 0.0 | AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010510217.1 | 0.0 | PREDICTED: transcription factor bHLH155 isoform X3 | ||||
Swissprot | Q58G01 | 0.0 | LHWL3_ARATH; Transcription factor bHLH155 | ||||
TrEMBL | E4MWT8 | 0.0 | E4MWT8_EUTHA; mRNA, clone: RTFL01-15-P09 | ||||
TrEMBL | V4MGN5 | 0.0 | V4MGN5_EUTSA; Uncharacterized protein | ||||
STRING | XP_010510217.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2083 | 20 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.3 | 0.0 | conserved peptide upstream open reading frame 7 |
Publications ? help Back to Top | |||
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