PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676709864
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family STAT
Protein Properties Length: 1483aa    MW: 165365 Da    PI: 6.4295
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676709864genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT162.11.2e-50103511481113
       STAT    1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypf 97  
                 ldvvl+na+g+pv+ dvevvasLly dsg++ve + ++ eapLLisy+G efs+ +r +kll+Gr+sf lkis Lssk+dnrLf+ikfeip+ k+ypf
  676709864 1035 LDVVLSNAIGKPVHNDVEVVASLLYVDSGTLVEANvNEGEAPLLISYEGAEFSADNRRIKLLNGRSSFNLKISLLSSKSDNRLFCIKFEIPNAKDYPF 1132
                 8********************************988************************************************************** PP

       STAT   98 leavskpirCisrsrn 113 
                 l+a++ pirCis +r 
  676709864 1133 LQALTYPIRCISPKRL 1148
                 ************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF017582.1E-39136313IPR002657Bile acid:sodium symporter/arsenical resistance protein Acr3
SuperFamilySSF511976.04E-96417745No hitNo description
Gene3DG3DSA:2.60.120.3301.8E-108418751IPR027443Isopenicillin N synthase-like
PfamPF142262.6E-27449547IPR026992Non-haem dioxygenase N-terminal domain
PROSITE profilePS5147114.543603703IPR005123Oxoglutarate/iron-dependent dioxygenase
PfamPF031711.1E-27608703IPR005123Oxoglutarate/iron-dependent dioxygenase
CDDcd103385.11E-6413781481No hitNo description
Gene3DG3DSA:3.30.505.106.6E-813851436IPR000980SH2 domain
SuperFamilySSF555504.27E-1113851473IPR000980SH2 domain
PROSITE profilePS500019.55913891483IPR000980SH2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0016020Cellular Componentmembrane
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1483 aa     Download sequence    Send to blast
MAASVISLPL SNGTTPSKSK SFHHKSKLTP LHLRVISYSS STRETSLKSR PSFDRSTTTT  60
TTVPISCRRR SVDFIPRCGV SSSDFPAERK KSFGEWVEFL GEAVSTAFPV WVSLGCLLGL  120
MRPSAFNWVT PNWTIIGLTV TMLGMGMTLT LDDLRGALKM PKELFAGFAL QYSVMPLSAF  180
LVSKLLDLPS HYAAGLILVG CCPGGTASNI VTYIARGNVA LSVLMTAAST LSAVIMTPLL  240
TAKLAKQYVA VDALGLVMST LQVVLLPVLA GAFLNQYFQR VVKFVSPLMP PIAVGTVAIL  300
CGTAIGQNAS AILTSGKQVV MASILLHVSG FLFGYLFSRF LKIDVPSSRT ISIEVGMQNS  360
VLGLVLAAQH FGNPLTAVPC AVSSVCHSII VDYLKSMEAE GETQWSSLIV PSVLEIMKEN  420
NFTTVPPRYL RSDQDTANIL DDSSLNSEIP VIDMKRLCSV PAMDSELQKL DLACQDWGFF  480
QLVNHGIDSS FLEKLEAEVQ DFFNLPMEEK KKFWQRSGEF EGFGQVNIVS EDQKLDWGDM  540
FILTTEPIRS RKSHLFSKLP PSFRETVETY SSEVKSIAKI LFAKMASVLE IKREEMEDLF  600
GDVWQSIKIN YYPPCPQPDQ VIGLAPHSDA AGLTILLQVN QVEGLQIKKD GKWVVVKPLP  660
NALVVNVGEI LEIITNGRYR SIEHRAMVNS EKERLSVAMF HSPGKETVIG PAKSLVDRQQ  720
QQRLFKSMRT QEFFDAFFAQ KLNGKSHLDR MRTDDPHKKH LIDVSVLVTT KGKRFLGFVL  780
QVEVFEGEVM AGASAIETDK YSVLEDFNVN VQVDNEEYVK FSLCFWVYLL NSTIFPSTII  840
RQYNYESLVL CILLSIPPFS LKGFQSLVYS GMSVSAPFLV LDENKKMMLL PLTLLHKEAP  900
DPVDTSSWTQ VPNASTKSEF PLEKWVHVGC EVSRSCMRLL IDGEIVGEQC LTSLLTKNNN  960
PECPRKISLF SVGGDGYSVQ GFIHSAEVLP ASGHVEYHYT KEPPLLLSVN KSSSSGVELD  1020
DDGVLRTACT EFFSLDVVLS NAIGKPVHND VEVVASLLYV DSGTLVEANV NEGEAPLLIS  1080
YEGAEFSADN RRIKLLNGRS SFNLKISLLS SKSDNRLFCI KFEIPNAKDY PFLQALTYPI  1140
RCISPKRLTH IDHHPLSTES PDLLHNSSSV KRARFGKENV SGSEESYQQC NSIPPTSAQF  1200
ENGNGVNMHH EEDKSSTDSE DSEMRDSALM RYTISDSTVF RYCLGNVTER SLLLKEITNN  1260
SSDDQVLEFA NQVSLYSGCS HHCYQINMAK KLIDEGTNVW ILISRNNQHF HWGNVVNEIE  1320
EHFMRISKCS SRSLTHQDFD FLRRISGCHE YEYITQENFE KMWCWLFPVA SSISWGMING  1380
LWRSSSPKWI EGFITKEDAE HSLQGQEPGT FILRFPSSRS WPHPDAGSLI VTYVGHDFAL  1440
HHKQLKIDHI CQRSETYMDA KPLQDMLLAE PELSRLGRII RSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5o7y_A1e-10841075218366Thebaine 6-O-demethylase
5o9w_A1e-10841075218366Thebaine 6-O-demethylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676709864
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3603380.0AF360338.1 Arabidopsis thaliana putative flavanone 3-hydroxylase (At1g78550) mRNA, complete cds.
GenBankAY0510760.0AY051076.1 Arabidopsis thaliana putative flavanone 3-hydroxylase (At1g78550) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3D1L60.0A0A0D3D1L6_BRAOL; Uncharacterized protein
STRINGBo6g122110.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B