PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676709566

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 462aa MW: 50133.6 Da PI: 6.7497

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676709566	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.5e-06	353	391	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L +A+eYIk L 676709566 353 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 391 5778999*********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.735	342	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0075	348	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-11	352	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.16E-6	352	396	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.2E-10	356	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MGDHHDFINS GSWWKVSSSC SASSSSSMRA SSIESGGSAV FQDKLHHHDH HSLATDHHLQ 60 MIGLGLSSQS PVDQWNQSLL RGDSKAETGF GVMLQENLNL DATSNANANT TSSTTSYQLQ 120 ESDSSHHQAL WRDPQINNSD FKPQLNMTST NRGFFLDHQF SPHGSSSTDS STVTCQGFSV 180 DNSTNTLYGA AATTPNSSSA MFHHQHQGAG FNLPGSSDQQ QSRNHQQSNL GYSQFGSSTG 240 NYDQMATTLP STWFLRSSPP KPHSPLRFSN NATFWNPAAT AGNVAPTHHD ASSNFFPALQ 300 PPQIHAPSFD QPSKSIPEIR DSSSSEVKRS GGDQPPAKKA KSEAASPSPA FKVRKEKMGD 360 RIAALQQLVS PFGKTDAASV LSEAIEYIKF LHQQVSALSN PYMKSGASLQ HQQSDHPKEL 420 EVSEEPDLRS RGLCLVPVSS TFPVTHDTTV DFWTPTFGGT FR

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MGDHHDFINS GSWWKVSSSC SASSSSSMRA SSIESGGSAV FQDKLHHHDH HSLATDHHLQ  60
MIGLGLSSQS PVDQWNQSLL RGDSKAETGF GVMLQENLNL DATSNANANT TSSTTSYQLQ  120
ESDSSHHQAL WRDPQINNSD FKPQLNMTST NRGFFLDHQF SPHGSSSTDS STVTCQGFSV  180
DNSTNTLYGA AATTPNSSSA MFHHQHQGAG FNLPGSSDQQ QSRNHQQSNL GYSQFGSSTG  240
NYDQMATTLP STWFLRSSPP KPHSPLRFSN NATFWNPAAT AGNVAPTHHD ASSNFFPALQ  300
PPQIHAPSFD QPSKSIPEIR DSSSSEVKRS GGDQPPAKKA KSEAASPSPA FKVRKEKMGD  360
RIAALQQLVS PFGKTDAASV LSEAIEYIKF LHQQVSALSN PYMKSGASLQ HQQSDHPKEL  420
EVSEEPDLRS RGLCLVPVSS TFPVTHDTTV DFWTPTFGGT FR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676709566

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118054	0.0	AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBank	BT008580	0.0	BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013614574.1	0.0	PREDICTED: transcription factor bHLH123-like isoform X1
Swissprot	Q8GXT3	0.0	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A3P5Z7X7	0.0	A0A3P5Z7X7_BRACM; Uncharacterized protein
STRING	Bo01052s010.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]