PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676709392
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 441aa    MW: 50159.9 Da    PI: 9.4713
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676709392genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.41.3e-072422881763
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                A+rsR RK+++i eLe+ v++L+ae ++   el+ l++    l +e+
  676709392 242 AQRSRVRKLQYISELERNVQALQAEGSKVSAELDFLNQRNLILSMEN 288
                89********************************9999887777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0081231290IPR004827Basic-leucine zipper domain
CDDcd147033.86E-15234281No hitNo description
Gene3DG3DSA:1.20.5.1706.3E-5242281No hitNo description
SuperFamilySSF579591.24E-5242284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MANSKGSQNV KDLMYPGKNA LLPPKIPFPS VSAPYSEYIP TGSIGSRHGQ KVNEEKTHHH  60
QRTSSESDLV EEPPFWLDDL LNEPESPVRK CGHRRSSSDS YAYLDVANAK NISLTLQNDF  120
SYRNMGSSSQ RGVHELDWNR NAQDAVLYSD SNFLKQTNRQ RDSLIASGAR PSWLPFSRES  180
VGVKHMGAPY LPQEGTVIPE TKNYAKTLPH EAKKFPSEDK NSNPQPVTYD ADNTRRAKQQ  240
FAQRSRVRKL QYISELERNV QALQAEGSKV SAELDFLNQR NLILSMENKA LKQRLESIAQ  300
EKLIKQLEQE VLEKEIGRLR ALYQQQQQQQ QQKQQQQQTH QPSASHKRSS SKDLDSQFSS  360
LSLNTKDSNC RRDSVSVTIF VTDFALRTTY YGAYFGAVKI VREEWLIESD AKELVVRRAI  420
NEGFSRPGKD SFYGNTSNCP L
Cis-element ? help Back to Top
SourceLink
PlantRegMap676709392
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529290.0AK352929.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392344.10.0uncharacterized protein At4g06598
RefseqXP_024004633.10.0uncharacterized protein At4g06598
RefseqXP_024004635.10.0uncharacterized protein At4g06598
RefseqXP_024004637.10.0uncharacterized protein At4g06598
TrEMBLE4MWN20.0E4MWN2_EUTHA; mRNA, clone: RTFL01-09-A16
TrEMBLV4JW230.0V4JW23_EUTSA; Uncharacterized protein
STRINGXP_006392343.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33602444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.20.0bZIP family protein