PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676709246

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HB-other

Protein Properties

Length: 1677aa MW: 188573 Da PI: 5.1065

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676709246	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.5e-19	44	99	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le+++ ++ yps+++r+eL++kl+L++rq ++WF+ rR k+kk 676709246 44 PKRQMKTPFQLETLEKVYSEETYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKK 99 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-17	31	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.81E-16	33	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.228	40	100	IPR001356	Homeobox domain
SMART	SM00389	7.8E-18	42	104	IPR001356	Homeobox domain
Pfam	PF00046	1.7E-16	44	99	IPR001356	Homeobox domain
CDD	cd00086	2.00E-14	45	99	No hit	No description
PROSITE profile	PS50827	17.434	544	603	IPR018501	DDT domain
SMART	SM00571	1.2E-23	544	603	IPR018501	DDT domain
Pfam	PF02791	3.4E-17	545	600	IPR018501	DDT domain
Pfam	PF05066	8.8E-16	726	793	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.2E-6	932	971	IPR028942	WHIM1 domain
Pfam	PF15613	6.0E-13	1076	1148	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1677 aa Download sequence Send to blast
MEMGSDEEDQ IRNVGGVDGN NKKKKKVVVV DHSSNSKDSL SAKPKRQMKT PFQLETLEKV 60 YSEETYPSEA TRAELSEKLD LSDRQLQMWF CHRRLKDKKD GQVKKPTKPT SIVPAAALSS 120 VNDLPVTGSV PELDSRSGSA SGSGCSPYSE SRRNFASGSS SSRAELDEYE TMGKAGYEPR 180 LSVMVRRAVV CIEAQLGEPL RDDGPILGME FDPLPPGAFG TPIAMQKHQV HQYESKMYEP 240 HDVRPRRSQA VARSFHEQQS LDDPSSFTPE MYGRYSESHA RGMDYEVSRS KSSSFMHGNG 300 PVPRSYGNAS RNCSTSQQDM PSPIVPSAHG DSFLLERDSS GLRTEDPYLL SDGVRKSNDV 360 HMKGKLNDNR LGRGSGQKDF EKLEIQRKKN EERMRKEMER HERERRKEEE RLMRERIKEE 420 ERLQREQRRE MERREKFLQR ENERAEKKKQ KEEVRREKDA IRRKIAIEKA TARRIAKESM 480 DLIEDEQLEL MDLAATSKGL SSVLQLDHDT LQHLELYRDS LSTFPPKALQ LKMPFTISPW 540 KDSDENVGNL LMVWRFLISF SDVLDLWPFT LDEFIQAFHD YDSRLLGEIH MTLLRSIIRD 600 IEDVARTPFS GIGNNQYTTA NPEGGHPQIV EGAYAWGFDI HSWKKHLNPL TWPEVLRQLG 660 LSSGFGPRLK KKNSRMTNAG DKDEAKGCED IISTIRSGSA AESAFALMRE KGLLAPRKSR 720 HRLTPGTVKF AAFHVLSLEG SKGLTVLELA DKIQKSGLRD LTTSKTPEAS ISVALTRDVK 780 LFERIAPSTY CVRAPYVKDP ADGEAILADA RKKIRAFENG FTGPEDVADL ERDEDFECDI 840 DEDPEVDDLA ALASASKSAD LVEANGLSGK GRETLFCHVK TDIKSEVETG VSSPPASSMK 900 SIVPQSHSEQ RKNAAVCCVE NTNAVVEDSN QGQSWIQGLT EGDYCHLSVE ERLEALVALV 960 GIANEGNSIR AGLEDRLEAA NSLKKQMWAE AQLDNSCMRD VLSKNESTMG VRIIQNSTRE 1020 MDSFDRDPSH LIDETKPLEV VSNDANISQE NCSSKRSRSQ LKSYIGHKAE EVYPYRSLPL 1080 GQDRRHNRYW HFAASASKND PCAGLLFVEL HDGKWRLIDS EEVFDTLVAS LDMRGVRESH 1140 LRIMLQKIEG PFKENACKNI KLARNPSLEE TCVVNHSPAD SMSPSSAVSG SNSDSMVAST 1200 SIRVELGRND IEKENLSKRF NDFQRWMWTE TYSSLPSYAR KYGKKRCELL ATCEVCVASY 1260 ISEYTHCTSC HQKLDMADSS ERKMLNSGSN ASPLPFGMRL LKPLLVFLEA SVPDEALESF 1320 WTEEKRKIWG FRLNASSSPE EILQVLTSLE NAIKKESLSP NFVSAKELLG AAGADDPVSV 1380 DVFPWIPKTV SAVALRLSDL DASIFYVKPE KPEINPEDEK EQISLFPGNS LLKGKGSKEQ 1440 EEQDEVVPNS GKKSNKRRVS FGSGSNRKVK KKKVQGGPSR FVAGKSNVSV DRNLMGVELN 1500 HQVPGRGKRT VRKRPERNDE DNYRLVSRMA DIVRPKSEEV EDEDEEEEEQ TFRDIDEDWA 1560 GETPREMDED WASETPNRVM TPMQVDDESD NSVGVESEDD DDGQFVDYSQ RNKWGLDWNS 1620 NPNEAMEDEE EVVGVEQVGR EDVAEMTESS GDDDVPANNA AANNYDRDSE DYSSSDS

Sequence ? help Back to Top

Protein Sequence Length: 1677 aa Download sequence Send to blast

MEMGSDEEDQ IRNVGGVDGN NKKKKKVVVV DHSSNSKDSL SAKPKRQMKT PFQLETLEKV  60
YSEETYPSEA TRAELSEKLD LSDRQLQMWF CHRRLKDKKD GQVKKPTKPT SIVPAAALSS  120
VNDLPVTGSV PELDSRSGSA SGSGCSPYSE SRRNFASGSS SSRAELDEYE TMGKAGYEPR  180
LSVMVRRAVV CIEAQLGEPL RDDGPILGME FDPLPPGAFG TPIAMQKHQV HQYESKMYEP  240
HDVRPRRSQA VARSFHEQQS LDDPSSFTPE MYGRYSESHA RGMDYEVSRS KSSSFMHGNG  300
PVPRSYGNAS RNCSTSQQDM PSPIVPSAHG DSFLLERDSS GLRTEDPYLL SDGVRKSNDV  360
HMKGKLNDNR LGRGSGQKDF EKLEIQRKKN EERMRKEMER HERERRKEEE RLMRERIKEE  420
ERLQREQRRE MERREKFLQR ENERAEKKKQ KEEVRREKDA IRRKIAIEKA TARRIAKESM  480
DLIEDEQLEL MDLAATSKGL SSVLQLDHDT LQHLELYRDS LSTFPPKALQ LKMPFTISPW  540
KDSDENVGNL LMVWRFLISF SDVLDLWPFT LDEFIQAFHD YDSRLLGEIH MTLLRSIIRD  600
IEDVARTPFS GIGNNQYTTA NPEGGHPQIV EGAYAWGFDI HSWKKHLNPL TWPEVLRQLG  660
LSSGFGPRLK KKNSRMTNAG DKDEAKGCED IISTIRSGSA AESAFALMRE KGLLAPRKSR  720
HRLTPGTVKF AAFHVLSLEG SKGLTVLELA DKIQKSGLRD LTTSKTPEAS ISVALTRDVK  780
LFERIAPSTY CVRAPYVKDP ADGEAILADA RKKIRAFENG FTGPEDVADL ERDEDFECDI  840
DEDPEVDDLA ALASASKSAD LVEANGLSGK GRETLFCHVK TDIKSEVETG VSSPPASSMK  900
SIVPQSHSEQ RKNAAVCCVE NTNAVVEDSN QGQSWIQGLT EGDYCHLSVE ERLEALVALV  960
GIANEGNSIR AGLEDRLEAA NSLKKQMWAE AQLDNSCMRD VLSKNESTMG VRIIQNSTRE  1020
MDSFDRDPSH LIDETKPLEV VSNDANISQE NCSSKRSRSQ LKSYIGHKAE EVYPYRSLPL  1080
GQDRRHNRYW HFAASASKND PCAGLLFVEL HDGKWRLIDS EEVFDTLVAS LDMRGVRESH  1140
LRIMLQKIEG PFKENACKNI KLARNPSLEE TCVVNHSPAD SMSPSSAVSG SNSDSMVAST  1200
SIRVELGRND IEKENLSKRF NDFQRWMWTE TYSSLPSYAR KYGKKRCELL ATCEVCVASY  1260
ISEYTHCTSC HQKLDMADSS ERKMLNSGSN ASPLPFGMRL LKPLLVFLEA SVPDEALESF  1320
WTEEKRKIWG FRLNASSSPE EILQVLTSLE NAIKKESLSP NFVSAKELLG AAGADDPVSV  1380
DVFPWIPKTV SAVALRLSDL DASIFYVKPE KPEINPEDEK EQISLFPGNS LLKGKGSKEQ  1440
EEQDEVVPNS GKKSNKRRVS FGSGSNRKVK KKKVQGGPSR FVAGKSNVSV DRNLMGVELN  1500
HQVPGRGKRT VRKRPERNDE DNYRLVSRMA DIVRPKSEEV EDEDEEEEEQ TFRDIDEDWA  1560
GETPREMDED WASETPNRVM TPMQVDDESD NSVGVESEDD DDGQFVDYSQ RNKWGLDWNS  1620
NPNEAMEDEE EVVGVEQVGR EDVAEMTESS GDDDVPANNA AANNYDRDSE DYSSSDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	99	RRLKDKKD
2	1455	1472	KRRVSFGSGSNRKVKKKK
3	1465	1472	NRKVKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676709246

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC010155	0.0	AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415655.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	V4L2Q3	0.0	V4L2Q3_EUTSA; Uncharacterized protein
STRING	XP_006415655.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1