PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676709110
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 298aa    MW: 33292.4 Da    PI: 8.9757
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676709110genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM126.71.9e-3951351127
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                lp+G+rF Pt+ el+++yL+ +++g + ++++ i+ +d+++veP +Lp+    + +++ ++w fF++r++++a+g r++r+t sgyWkatg+  +v+s +
  676709110   5 LPVGYRFYPTEVELISFYLRIQLDGGNATINSLIPILDVFSVEPAQLPNlageRSRGDAEQWLFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSPD 104
                799***************************999***************645655555777**************************************** PP

        NAM  97 gelvglkktLvfykgrapkgektdWvmheyr 127
                ++++g+kkt+vfy g+ap+g+kt+W m+ey+
  676709110 105 NRVIGVKKTMVFYIGKAPTGRKTKWKMNEYK 135
                ******************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-444161IPR003441NAC domain
PROSITE profilePS5100546.0635161IPR003441NAC domain
PfamPF023652.5E-196135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEDELPVGYR FYPTEVELIS FYLRIQLDGG NATINSLIPI LDVFSVEPAQ LPNLAGERSR  60
GDAEQWLFFV PRQEREARGG RPSRTTGSGY WKATGSPGPV FSPDNRVIGV KKTMVFYIGK  120
APTGRKTKWK MNEYKGIDEA ARTSTIPKLR NEFSVCRIYI KSGSSRAFDR RPIEAYQIER  180
KFPSNGVESS CHATVSTSQE TSYSRRDQVD LLMNATATQS NSEMVNGLSK FRGRKLPYNG  240
VKITSCATVS TSPETSYSGV GEQVQLPVNA TTQSSSEMVD GLSQPFWEWE LLNWSGTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-34516617170NO APICAL MERISTEM PROTEIN
1ut4_B9e-34516617170NO APICAL MERISTEM PROTEIN
1ut7_A9e-34516617170NO APICAL MERISTEM PROTEIN
1ut7_B9e-34516617170NO APICAL MERISTEM PROTEIN
4dul_A9e-34516617170NAC domain-containing protein 19
4dul_B9e-34516617170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676709110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386411e-88AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7.
GenBankCP0026861e-88CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437066.11e-164PREDICTED: putative NAC domain-containing protein 61
SwissprotQ9M2901e-119NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBLA0A397YZT91e-158A0A397YZT9_BRACM; Uncharacterized protein
TrEMBLM4DSE91e-158M4DSE9_BRARP; Uncharacterized protein
STRINGBra019442.1-P1e-159(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.21e-124NAC domain containing protein 61