PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676709010

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 732aa MW: 81029.5 Da PI: 6.356

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676709010	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.3	0.00064	587	624	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq 676709010 587 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 624 67799************55......5566667777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.4E-32	33	188	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	0.0011	568	625	No hit	No description
PROSITE profile	PS50888	11.28	574	623	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-4	587	642	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-5	587	630	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MGKRQISQDE VGPPINPRAG LRREQAGRGS YREILRSLCS NTEWKYAVFW KLHHRSRMVL 60 TLEDAYYDNQ GHNNSPEVQG CSVIPKNMHG GHDPLSLAVA KMAYHVYSLG EGIVGQVAVS 120 GEHQWVFPEY YDNSHSAFEF QNVWESQISA GIKTILVVAV GPYGVVQLGS LRKVDEDVTL 180 VNHIKHMFLA LKDPLADHAA NLMQCNMNNS LCLPKISSEC LHVEAFPNCA GEVDKAMDVE 240 ESNILTQYKS RRSDIMPYNN TPSSYLLMEK AAQVIGGREV VQGSTCRSYS GVTFGFPVDL 300 VDARHENQVG TNLISDIPHV EMTSGCKDPR ELDPNLHPYL KNHVVNNTSS SALAIEAERL 360 MTDQSYLGLD STFHTLSADN GSSYQGNKYH LKETERMAER KCESSRFDAL ISSGYPFAGS 420 ELLEALGSGF KQTSKGHEEL VKSEHGSTIR LTDDMSHSQL TFDSGRENLL DAVVANVCHG 480 DGNARDDILS SRSVQSLLTS MEMAEPSGQK KHIVGNSIDT AMNQLPLAEM DTQQNPSDIC 540 GAFSSIGFSS TCPSSSSDQF QTSLEMPKKN KKRAKPGESS RPRPRDRQLI QDRIKELREL 600 VPNGSKCSID SLLERTIKHM LFLQNVTKHA DKLSKSANTK MQQKETGTQG STCAVEVGGH 660 LQVCSIIVEN LNKQGMVLIE MLCEECSHFL EIANVIRSLD LIILRGITEA QGEKTWICFV 720 VEVGVEKYPL RG

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MGKRQISQDE VGPPINPRAG LRREQAGRGS YREILRSLCS NTEWKYAVFW KLHHRSRMVL  60
TLEDAYYDNQ GHNNSPEVQG CSVIPKNMHG GHDPLSLAVA KMAYHVYSLG EGIVGQVAVS  120
GEHQWVFPEY YDNSHSAFEF QNVWESQISA GIKTILVVAV GPYGVVQLGS LRKVDEDVTL  180
VNHIKHMFLA LKDPLADHAA NLMQCNMNNS LCLPKISSEC LHVEAFPNCA GEVDKAMDVE  240
ESNILTQYKS RRSDIMPYNN TPSSYLLMEK AAQVIGGREV VQGSTCRSYS GVTFGFPVDL  300
VDARHENQVG TNLISDIPHV EMTSGCKDPR ELDPNLHPYL KNHVVNNTSS SALAIEAERL  360
MTDQSYLGLD STFHTLSADN GSSYQGNKYH LKETERMAER KCESSRFDAL ISSGYPFAGS  420
ELLEALGSGF KQTSKGHEEL VKSEHGSTIR LTDDMSHSQL TFDSGRENLL DAVVANVCHG  480
DGNARDDILS SRSVQSLLTS MEMAEPSGQK KHIVGNSIDT AMNQLPLAEM DTQQNPSDIC  540
GAFSSIGFSS TCPSSSSDQF QTSLEMPKKN KKRAKPGESS RPRPRDRQLI QDRIKELREL  600
VPNGSKCSID SLLERTIKHM LFLQNVTKHA DKLSKSANTK MQQKETGTQG STCAVEVGGH  660
LQVCSIIVEN LNKQGMVLIE MLCEECSHFL EIANVIRSLD LIILRGITEA QGEKTWICFV  720
VEVGVEKYPL RG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676709010

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352985	0.0	AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010510217.1	0.0	PREDICTED: transcription factor bHLH155 isoform X3
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	E4MWT8	0.0	E4MWT8_EUTHA; mRNA, clone: RTFL01-15-P09
TrEMBL	V4MGN5	0.0	V4MGN5_EUTSA; Uncharacterized protein
STRING	XP_010510217.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.3	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]