PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676708942 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | TCP | ||||||||
Protein Properties | Length: 348aa MW: 38526.8 Da PI: 8.1659 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.4 | 3.1e-35 | 49 | 165 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksq 101 g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a ++i el+ +++ +a + +++ +s 676708942 49 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASESISELPPINANFD------------------QALSLSKSACSSG 130 689************************************************************933333..................2222223344555 PP TCP 102 ksaasalnlak.esrakarararertrekmriknk 135 +s++s l+l++ e r kar+rarert++++ ++ + 676708942 131 TSESSLLSLSRtEIRGKARERARERTAKEKDKDLQ 165 6666779999999***********99998877654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.0E-33 | 50 | 129 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.624 | 51 | 109 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.766 | 142 | 160 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MEVDDDIDEQ QQQQTSRKLQ RISSDNNDKT GMRDWNNPSS RIIRVSRASG GKDRHSKVLT 60 SKGLRDRRIR LSVATAIQFY DLQDRLGFDQ PSKAVEWLIN AASESISELP PINANFDQAL 120 SLSKSACSSG TSESSLLSLS RTEIRGKARE RARERTAKEK DKDLQNAQSS FTQLLTGGFD 180 EPNRHWTGGG GGSSDCFNPV QLIPNSSSSS LHHFNSNHHR QETSLSHHNH NHNHNHFSFV 240 PDYNFGISSS DSPGAAAING GCYSSRGTLQ SNSQSLFLNN SNNINQRSIS SSSSSSSPTD 300 SQSISFFMAT PPPLDHHSHQ LPAAFDGRLY LYYGEGNRNS DEKAKDRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-21 | 56 | 110 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-21 | 56 | 110 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00169 | DAP | Transfer from AT1G30210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676708942 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353156 | 1e-178 | AK353156.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-I20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115180.1 | 0.0 | PREDICTED: transcription factor TCP24-like | ||||
Refseq | XP_009115181.1 | 0.0 | PREDICTED: transcription factor TCP24-like | ||||
Swissprot | Q9C758 | 1e-154 | TCP24_ARATH; Transcription factor TCP24 | ||||
TrEMBL | M4EU83 | 0.0 | M4EU83_BRARP; Uncharacterized protein | ||||
STRING | Bra032365.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13840 | 17 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-111 | TCP family protein |
Publications ? help Back to Top | |||
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