PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676708480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | ERF | ||||||||
Protein Properties | Length: 196aa MW: 21361.3 Da PI: 7.344 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.5e-17 | 32 | 81 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+rw+ g+Wv eIr+p++ +kr +lg++ t+e+Aa a++ a+++l+ge 676708480 32 RYRGIRWRG--GKWVTEIRVPKK---NKRLWLGTYRTPEMAASAYDVAALALKGE 81 59*****86..*********976...4*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-18 | 32 | 89 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.888 | 32 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-28 | 32 | 94 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-10 | 32 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.86E-25 | 32 | 88 | No hit | No description |
PRINTS | PR00367 | 2.9E-6 | 33 | 44 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-25 | 33 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 70 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MPSRSYHCRS SSTTITTGNN KTPVTWGSAI FRYRGIRWRG GKWVTEIRVP KKNKRLWLGT 60 YRTPEMAASA YDVAALALKG EEAVLNFPGS VKSYPLPFVV VSAATDVITT TVVSTAAVVV 120 SKAKGGEKNE EGVGNVGVGG YSTTEFVDEE ELFNMPNLLV DMAWGMMVAP PRIGSPLLDD 180 SLENYIGESL WSYDVV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676708480 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018454835.1 | 2e-54 | PREDICTED: ethylene-responsive transcription factor ERF026-like | ||||
Swissprot | Q9CAN9 | 1e-45 | ERF26_ARATH; Ethylene-responsive transcription factor ERF026 | ||||
TrEMBL | A0A087HEJ5 | 3e-55 | A0A087HEJ5_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HEJ5 | 4e-56 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1957 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 1e-31 | ERF family protein |