PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676708342 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 202aa MW: 23238.1 Da PI: 6.7882 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.3 | 2.3e-07 | 90 | 132 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +E++RR+ i+++ + L+e+ P++ K + a+ Le veYIksL+ 676708342 90 MEKKRRQLIRDKVDILQEMTPNC-----AKSDLAAKLESIVEYIKSLK 132 8*********************8.....799***************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.9E-10 | 80 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.02E-11 | 80 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.036 | 82 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.65E-7 | 87 | 135 | No hit | No description |
SMART | SM00353 | 2.8E-5 | 88 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.8E-5 | 90 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEINNSNQGT HDQELYSLSE LISSLSSDDL NELNPLQEIF GAHSSSSSTL SFSEPKDFTK 60 NRDQSDNRYH CNKSNRTPKR QRSMEYRVLM EKKRRQLIRD KVDILQEMTP NCAKSDLAAK 120 LESIVEYIKS LKQQIDIMST SYTQPAGYMS PFYGAQAPCM SPYTSPWGYY VPGIPMMPHQ 180 NIPFNSQFHQ VHDMARPDQT QI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in somatic embryogenesis. Acts as positive regulator of somatic embryo formation (PubMed:23874927, PubMed:26973252). Acts as positive regulator of ECP63 by targeting its promoter and inducing its expression (PubMed:26973252). {ECO:0000269|PubMed:23874927, ECO:0000269|PubMed:26973252}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676708342 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619093.1 | 1e-109 | PREDICTED: transcription factor bHLH109 isoform X2 | ||||
Swissprot | Q5XVH0 | 7e-65 | BH109_ARATH; Transcription factor bHLH109 | ||||
TrEMBL | A0A0D3ANW8 | 1e-108 | A0A0D3ANW8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DJ67 | 1e-108 | A0A3P6DJ67_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g057720.1 | 1e-109 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15032 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68240.1 | 5e-57 | bHLH family protein |
Publications ? help Back to Top | |||
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