PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676707802
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 150aa    MW: 16971.8 Da    PI: 7.5036
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676707802genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-055274123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C + F ++  L  H++ H
  676707802 52 FSCNYCQRKFYSSQALGGHQNAH 74
               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.78E-64979No hitNo description
PROSITE profilePS5015711.0945279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDFQPNTSLR LSLPSYKNNQ LNLELVLEPS SMSSSSSSST NSSSCLEQPR VFSCNYCQRK  60
FYSSQALGGH QNAHKLERTL AKKSRELFRS SRTVDSDQPY PFSGRFELYG RGYEGFVESG  120
GPRDFSGRHM PESGLDQDQE MTHLDLSLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676707802
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114821e-156AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2.
GenBankATHZFPB1e-156L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds.
GenBankCP0026881e-156CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627204.16e-90PREDICTED: zinc finger protein 2
RefseqXP_022554540.16e-90zinc finger protein 2-like
RefseqXP_022554547.16e-90zinc finger protein 2-like
SwissprotQ392617e-88ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A078FFX01e-88A0A078FFX0_BRANA; BnaC03g12900D protein
TrEMBLA0A087GBP91e-88A0A087GBP9_ARAAL; Uncharacterized protein
TrEMBLA0A0D3B2Z71e-88A0A0D3B2Z7_BRAOL; Uncharacterized protein
TrEMBLA0A397ZTX33e-88A0A397ZTX3_BRACM; Uncharacterized protein
TrEMBLA0A3P6A5501e-88A0A3P6A550_BRACM; Uncharacterized protein
TrEMBLA0A3P6AJV11e-88A0A3P6AJV1_BRAOL; Uncharacterized protein
TrEMBLM4CRH41e-88M4CRH4_BRARP; Uncharacterized protein
STRINGCagra.2848s0032.1.p6e-89(Capsella grandiflora)
STRINGBra006815.1-P2e-89(Brassica rapa)
STRINGBo3g019270.12e-89(Brassica oleracea)
STRINGA0A087GBP92e-89(Arabis alpina)
STRINGXP_006281125.16e-89(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-88zinc finger protein 2