PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676707580
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 648aa    MW: 70276.6 Da    PI: 5.1294
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676707580genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.64.4e-1102696482374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                +++++e+A+a+++g++e a+++Lar+s++ s+++++ +Rl+ +++ AL +r+         al  s+++e   +e+l +++l++e+sP++k+++++aN a
  676707580 269 RQTVMEIATAIAEGKTEIASEILARVSQTPSQRRNSEERLVDFMVTALWSRIIP------TAL--SPATELYGKEHLLSTQLLYELSPCFKLGFVAANLA 360
                6889*************************************************9......344..33444469*************************** PP

       GRAS 102 Ileavege..erv...HiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvakrle 187
                Ilea+ ++  ++v   H++Df+i++G+Q+ +Ll+ L++R+ ++ p  ++iT+v +++ g        +e+l+++g+rL+++ ++lg++++fnv++  rl 
  676707580 361 ILEATGNNddDEVtsfHVVDFEIGEGGQYFNLLHILSTRRsGKNPlVVKITAVTNNSDGfsvagdrGEERLKTVGDRLSELGDRLGISVRFNVVAGLRLC 460
                *****99988444555*********************9985444459********888899***9999*************************9888*** PP

       GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                dl+ e+L ++p+EalaVnl+++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n+++Fl r++e++ +y a++ds+e+++p+ + +r+kvE+
  676707580 461 DLSRESLGCDPDEALAVNLAFKLYRVPDESVCMENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGAMLDSVESTVPNSNLDRAKVEE 560
                **************************************************************************************************** PP

       GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +gr++ n+vaceg +r+er+e ++kWr+r+++aGF+ ++lsek ++++k+ l++ +    g++v+e++g +++gW++r+L ++SaWr
  676707580 561 G-IGRKLINAVACEGIDRVERCEVFGKWRMRMSMAGFELMQLSEKLTESMKSRLSNGNrvHSGFTVKEDNGGVCFGWMGRTLAVASAWR 648
                *.**************************************************99987777899*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.549242626IPR005202Transcription factor GRAS
PfamPF035141.5E-107269648IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MASGFPGGGS GGPEFNGVGG RSIPGGSGTV INSGNSNSHP SYRNQIPGIF LDQIGNRISG  60
GNGIVGKRTL ADFQAAQLQQ QQHQSYHNQA AINAFLLRSV KPRTFQNLQS PTIDLTSVND  120
MSMFGGGSSQ RYVSPFLHNV VRSQMQQQSD FGLYNGIQMG VGSGNHQTLA GVPCIEPVQN  180
VNRVEESENM LNSLRELEKQ LLDDDDDESD VQGGDDDVSV ITHTNNDWIH SPVTPNSNPN  240
QVTSSSPSSS SSSSSPSTAS TTTTSVCSRQ TVMEIATAIA EGKTEIASEI LARVSQTPSQ  300
RRNSEERLVD FMVTALWSRI IPTALSPATE LYGKEHLLST QLLYELSPCF KLGFVAANLA  360
ILEATGNNDD DEVTSFHVVD FEIGEGGQYF NLLHILSTRR SGKNPLVVKI TAVTNNSDGF  420
SVAGDRGEER LKTVGDRLSE LGDRLGISVR FNVVAGLRLC DLSRESLGCD PDEALAVNLA  480
FKLYRVPDES VCMENPRDEL LRRVKGLKPR VVTLVEQEMN SNTAPFLGRV SESCACYGAM  540
LDSVESTVPN SNLDRAKVEE GIGRKLINAV ACEGIDRVER CEVFGKWRMR MSMAGFELMQ  600
LSEKLTESMK SRLSNGNRVH SGFTVKEDNG GVCFGWMGRT LAVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-3526764811375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676707580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401816.10.0scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLV4LHQ50.0V4LHQ5_EUTSA; Uncharacterized protein
STRINGXP_006401816.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8