PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676707580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | GRAS | ||||||||
Protein Properties | Length: 648aa MW: 70276.6 Da PI: 5.1294 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 359.6 | 4.4e-110 | 269 | 648 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +++++e+A+a+++g++e a+++Lar+s++ s+++++ +Rl+ +++ AL +r+ al s+++e +e+l +++l++e+sP++k+++++aN a 676707580 269 RQTVMEIATAIAEGKTEIASEILARVSQTPSQRRNSEERLVDFMVTALWSRIIP------TAL--SPATELYGKEHLLSTQLLYELSPCFKLGFVAANLA 360 6889*************************************************9......344..33444469*************************** PP GRAS 102 Ileavege..erv...HiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvakrle 187 Ilea+ ++ ++v H++Df+i++G+Q+ +Ll+ L++R+ ++ p ++iT+v +++ g +e+l+++g+rL+++ ++lg++++fnv++ rl 676707580 361 ILEATGNNddDEVtsfHVVDFEIGEGGQYFNLLHILSTRRsGKNPlVVKITAVTNNSDGfsvagdrGEERLKTVGDRLSELGDRLGISVRFNVVAGLRLC 460 *****99988444555*********************9985444459********888899***9999*************************9888*** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 dl+ e+L ++p+EalaVnl+++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n+++Fl r++e++ +y a++ds+e+++p+ + +r+kvE+ 676707580 461 DLSRESLGCDPDEALAVNLAFKLYRVPDESVCMENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGAMLDSVESTVPNSNLDRAKVEE 560 **************************************************************************************************** PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +gr++ n+vaceg +r+er+e ++kWr+r+++aGF+ ++lsek ++++k+ l++ + g++v+e++g +++gW++r+L ++SaWr 676707580 561 G-IGRKLINAVACEGIDRVERCEVFGKWRMRMSMAGFELMQLSEKLTESMKSRLSNGNrvHSGFTVKEDNGGVCFGWMGRTLAVASAWR 648 *.**************************************************99987777899*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.549 | 242 | 626 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-107 | 269 | 648 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 648 aa Download sequence Send to blast |
MASGFPGGGS GGPEFNGVGG RSIPGGSGTV INSGNSNSHP SYRNQIPGIF LDQIGNRISG 60 GNGIVGKRTL ADFQAAQLQQ QQHQSYHNQA AINAFLLRSV KPRTFQNLQS PTIDLTSVND 120 MSMFGGGSSQ RYVSPFLHNV VRSQMQQQSD FGLYNGIQMG VGSGNHQTLA GVPCIEPVQN 180 VNRVEESENM LNSLRELEKQ LLDDDDDESD VQGGDDDVSV ITHTNNDWIH SPVTPNSNPN 240 QVTSSSPSSS SSSSSPSTAS TTTTSVCSRQ TVMEIATAIA EGKTEIASEI LARVSQTPSQ 300 RRNSEERLVD FMVTALWSRI IPTALSPATE LYGKEHLLST QLLYELSPCF KLGFVAANLA 360 ILEATGNNDD DEVTSFHVVD FEIGEGGQYF NLLHILSTRR SGKNPLVVKI TAVTNNSDGF 420 SVAGDRGEER LKTVGDRLSE LGDRLGISVR FNVVAGLRLC DLSRESLGCD PDEALAVNLA 480 FKLYRVPDES VCMENPRDEL LRRVKGLKPR VVTLVEQEMN SNTAPFLGRV SESCACYGAM 540 LDSVESTVPN SNLDRAKVEE GIGRKLINAV ACEGIDRVER CEVFGKWRMR MSMAGFELMQ 600 LSEKLTESMK SRLSNGNRVH SGFTVKEDNG GVCFGWMGRT LAVASAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-35 | 267 | 648 | 11 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676707580 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006401816.1 | 0.0 | scarecrow-like protein 8 | ||||
Swissprot | Q9FYR7 | 0.0 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
TrEMBL | V4LHQ5 | 0.0 | V4LHQ5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006401816.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4350 | 28 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 0.0 | SCARECROW-like 8 |